CN184379

Overview
NameCN184379
Unique NameCN184379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184379 vs. ExPASy Swiss-Prot
Match: MRI40_XENTR (BRCA1-A complex subunit MERIT40 OS=Xenopus tropicalis GN=merit40 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 63/219 (28.77%), Postives = 96/219 (43.84%), Query Frame = 3
Query:  102 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN-------RILRVILIYCRSSVRPQHQWPVNQK------LFTMDVLYLHDKPGPDNCPQKVYDALVDALEHVSENEGYIFE-SGQGLARILFRQMCVLLSHPQQRCVQ 716
            E +I C+D+ +E +   K   FNG     L++ ++ I +FV +K  I+  H FA V     A WL   F+SD     + +  +  T+ C   +L  LF L     +     N        ++R+ILIY R + +P      N K       F  DV+Y+H+    +    K   +    L+  S+   Y +E S  G A  L   M  LL+HP QR  Q
Sbjct:   84 EKVIICLDL-SEEMSTQKLESFNGSKANALNSSQKMIEMFVRTKHKIDKRHEFALVVANNEAMWL-SGFTSDPREVCSCLYDLE-TNVCESFNLEGLFNLIQQRTEFPVTDNVQTIPPPYVVRIILIYSRPASQPALNLTDNMKKMLQCPYFFFDVIYIHNGSEEEELRWKDIFSFFSGLD--SKGTSYKYEVSITGPALELHNCMARLLAHPLQRPFQ 297          
BLAST of CN184379 vs. ExPASy Swiss-Prot
Match: MRI40_XENLA (BRCA1-A complex subunit MERIT40 OS=Xenopus laevis GN=merit40 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 63/219 (28.77%), Postives = 96/219 (43.84%), Query Frame = 3
Query:  102 EDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAILLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHLFKLASHEAKKSRAQN-------RILRVILIYCRSSVRPQHQWPVNQK------LFTMDVLYLHDKPGPDNCPQKVYDALVDALEHVSENEGYIFE-SGQGLARILFRQMCVLLSHPQQRCVQ 716
            E +I C+D+ +E +   K   FNG     L++ ++ I +FV +K  I+  H FA V     A WL   F+SD     + +  +  T+ C   +L  LF L     +     N        ++R+ILIY R + +P      N K       F  DV+Y+H+    +    K       +L+  S+   Y +E S  G A  L   M  LL+HP QR  Q
Sbjct:   94 EKVIICLDL-SEEMSTQKLESFNGSKANALNSSQKMIEMFVRTKHKIDKRHEFALVVANNEAMWL-SGFTSDPREVCSCLYDLE-TNVCESFNLEGLFNLIQQRTEFPVTDNVQTIPPPYVVRIILIYSRPASQPALALTDNMKKMLQCPYFFFDVIYIHNGSEEEELCWKDIFGFFSSLD--SKGTSYKYEVSITGPALELHNCMARLLAHPLQRPFQ 307          
The following BLAST results are available for this feature:
BLAST of CN184379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MRI40_XENTR8.368e-1228.77BRCA1-A complex subunit MERIT40 OS=Xenopus tropica... [more]
MRI40_XENLA1.427e-1128.77BRCA1-A complex subunit MERIT40 OS=Xenopus laevis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005G12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184379 ID=CN184379; Name=CN184379; organism=Citrus sinensis; type=EST; length=740bp
GCAGGATCACTGTGTCTGTAGAAGAGAAATCGATGGAGGGAATAGAGGGA
GAAAGCTCAGGAGCAGGGCGATTCACGTTGCCGCCAATGCGCATAAGCAA
CGAAGACATAATATTTTGTGTAGATGTGGACGCCGAATCGCTAGTGGAAA
TGAAATCAACTGGCTTCAATGGGAAACCAATCACCAGACTGGATGCTATG
AAGCAAGCGATCCTCCTCTTCGTTAACTCCAAGCTCTCTATCAACCCCGA
TCACCGTTTCGCTTTTGTCACTCTCGCCAAAACCGCTTCCTGGCTTCGGA
AAGAGTTCAGCAGTGACATAGAGTCTACTTTGACTGCAGTCCGGGGGATT
TCAGCTACTTCTGCCTGTGGTCAGGCAGATCTCACCCATCTCTTCAAGTT
AGCATCTCATGAAGCAAAGAAATCTCGTGCACAGAACCGGATTCTCCGTG
TGATTCTTATATACTGCAGATCATCTGTAAGACCACAACATCAATGGCCT
GTGAACCAGAAACTCTTCACTATGGATGTATTGTACCTTCATGACAAGCC
TGGACCTGACAATTGCCCCCAGAAGGTCTATGATGCTCTTGTTGATGCCC
TTGAACACGTCTCTGAGAATGAGGGCTACATCTTTGAGAGCGGGCAGGGG
TTAGCTCGTATCCTCTTCCGGCAAATGTGTGTGCTGTTATCACATCCCCA
ACAACGGTGTGTGCAGGATGATGTTGACATACCCAAGTCT
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