EY666393

Overview
NameEY666393
Unique NameEY666393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666393 vs. ExPASy Swiss-Prot
Match: MCAT_ARATH (Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.234e-41
Identity = 87/123 (70.73%), Postives = 97/123 (78.86%), Query Frame = 2
Query:  245 MGDIAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLT-RQPADYLRGWGWCCCFFSC 610
            M D  KDL SGTVGGAAQL+ GHPFDTIKVKLQSQP P PGQ P+Y GA+DAVKQT+A+EG +GLYKGMGAPLATVAAFNA+LFTVRGQME LLRS+ G PLT  Q      G G+   F +C
Sbjct:    1 MADAWKDLASGTVGGAAQLVVGHPFDTIKVKLQSQPTPAPGQLPRYTGAIDAVKQTVASEGTKGLYKGMGAPLATVAAFNAVLFTVRGQMEGLLRSEAGVPLTISQQFVAGAGAGFAVSFLAC 123          
BLAST of EY666393 vs. ExPASy Swiss-Prot
Match: DIF1_CAEEL (Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.919e-18
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 2
Query:  245 MGDIAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLT 553
            M D+  +  +G VGG+  +I GHPFDT+KV++Q+ P P PG+ P++ GA+D VK+T++ EG   LYKGM APL  V+   A+ F      + L ++ P   +T
Sbjct:    1 MSDVLLNFIAGGVGGSCTVIVGHPFDTVKVRIQTMPMPKPGEKPQFTGALDCVKRTVSKEGFFALYKGMAAPLVGVSPLFAVFFGGCAVGKWLQQTDPSQEMT 103          
BLAST of EY666393 vs. ExPASy Swiss-Prot
Match: MCAT_MACFA (Mitochondrial carnitine/acylcarnitine carrier protein OS=Macaca fascicularis GN=SLC25A20 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.544e-17
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  260 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQP 538
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G  D  ++T+  EG RGLY+GM AP+  V    A+ F   G  + L +  P
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGIRGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHP 104          
BLAST of EY666393 vs. ExPASy Swiss-Prot
Match: MCAT_RAT (Mitochondrial carnitine/acylcarnitine carrier protein OS=Rattus norvegicus GN=Slc25a20 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.547e-17
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 2
Query:  260 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLT 553
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G +D  ++T+  EG  GLY+GM AP+  V    A+ F   G  + L +  P   LT
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTIDCFRKTLFREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKRLQQKSPEDELT 109          
BLAST of EY666393 vs. ExPASy Swiss-Prot
Match: MCAT_HUMAN (Mitochondrial carnitine/acylcarnitine carrier protein OS=Homo sapiens GN=SLC25A20 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.248e-16
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  260 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQP 538
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G  D  ++T+  EG  GLY+GM AP+  V    A+ F   G  + L +  P
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHP 104          
BLAST of EY666393 vs. ExPASy Swiss-Prot
Match: COLT_DROME (Congested-like trachea protein OS=Drosophila melanogaster GN=colt PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.540e-16
Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 2
Query:  260 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLF 496
            K   +G  GG   ++ GHP DTIKV+LQ+ P P PG+ P Y G  D   +TI  EG RGLYKGM APL  VA   A+ F
Sbjct:   17 KSFLTGGFGGICNVLSGHPLDTIKVRLQTMPRPAPGEQPLYRGTFDCAAKTIKNEGVRGLYKGMSAPLTGVAPIFAMCF 95          
BLAST of EY666393 vs. ExPASy Swiss-Prot
Match: MCFG_DICDI (Mitochondrial substrate carrier family protein G OS=Dictyostelium discoideum GN=mcfG PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  260 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAP 547
            KD+ +G++GG  Q+  GHP DTIKV+LQ+Q        P Y+G MD +K+TI+ EG  GLYKG+ +PL  ++  N+++F   GQ + L++     P
Sbjct:   15 KDIVAGSIGGVGQVFTGHPLDTIKVRLQTQSVG----NPIYSGTMDCLKKTISQEGFAGLYKGVASPLVGLSIMNSVMFLAYGQSKTLIQKLSDNP 106          
BLAST of EY666393 vs. ExPASy Swiss-Prot
Match: MCAT_MOUSE (Mitochondrial carnitine/acylcarnitine carrier protein OS=Mus musculus GN=Slc25a20 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  260 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQP 538
            K+L +G  GG   +  GHP DT+KV+LQ+QP  L GQPP Y+G +D  ++T+  EG  GLY+GM AP+  V    A+ F   G  + L +  P
Sbjct:   12 KNLLAGGFGGMCLVFVGHPLDTVKVRLQTQPPSLSGQPPMYSGTLDCFRKTLMREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKSP 104          
BLAST of EY666393 vs. ExPASy Swiss-Prot
Match: MCFS_DICDI (Mitochondrial substrate carrier family protein S OS=Dictyostelium discoideum GN=mcfS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.578e-15
Identity = 44/98 (44.90%), Postives = 57/98 (58.16%), Query Frame = 2
Query:  260 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLT 553
            KD  +GTV GAA L  GHPFDTI+V+LQ+   P+        G M+  + TI  EG  GLYKG+ +PL  +    A+LF   GQM+ LL+     PLT
Sbjct:    8 KDSIAGTVAGAACLFTGHPFDTIRVRLQTSNTPI--------GIMECFRNTIKYEGFSGLYKGVTSPLFGMMFETAVLFAGYGQMKVLLQKDENTPLT 97          

HSP 2 Score: 22.7126 bits (47), Expect = 7.578e-15
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 3
Query:  555 VNQQIICGAGAGVAVSFLACPTELI 629
            V Q  I G  AGV  S +  P EL+
Sbjct:   98 VGQCAIAGGFAGVGASVVLTPVELV 122          
BLAST of EY666393 vs. ExPASy Swiss-Prot
Match: YMC1_YEAST (Carrier protein YMC1, mitochondrial OS=Saccharomyces cerevisiae GN=YMC1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.346e-13
Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  254 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQME 517
            + KDL +GT GG AQ++ G PFDT KV+LQ+   P          AM+ V++ +A EGPRG YKG   PL  V A  +L F V   M+
Sbjct:   25 VVKDLLAGTAGGIAQVLVGQPFDTTKVRLQTSSTP--------TTAMEVVRKLLANEGPRGFYKGTLTPLIGVGACVSLQFGVNEAMK 104          

HSP 2 Score: 25.409 bits (54), Expect = 1.346e-13
Identity = 11/32 (34.38%), Postives = 17/32 (53.12%), Query Frame = 3
Query:  561 QQIICGAGAGVAVSFLACPTELIPMQVASPKG 656
            Q   CG   G+  SFLA P E + +++ +  G
Sbjct:  122 QYYACGVTGGIVNSFLASPIEHVRIRLQTQTG 153          
The following BLAST results are available for this feature:
BLAST of EY666393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
MCAT_ARATH2.234e-4170.73Mitochondrial carnitine/acylcarnitine carrier-like... [more]
DIF1_CAEEL5.919e-1841.75Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 P... [more]
MCAT_MACFA6.544e-1745.16Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCAT_RAT8.547e-1743.88Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCAT_HUMAN3.248e-1644.09Mitochondrial carnitine/acylcarnitine carrier prot... [more]
COLT_DROME5.540e-1650.63Congested-like trachea protein OS=Drosophila melan... [more]
MCFG_DICDI1.612e-1541.67Mitochondrial substrate carrier family protein G O... [more]
MCAT_MOUSE1.612e-1543.01Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCFS_DICDI7.578e-1544.90Mitochondrial substrate carrier family protein S O... [more]
YMC1_YEAST1.346e-1344.32Carrier protein YMC1, mitochondrial OS=Saccharomyc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666393 ID=EY666393; Name=EY666393; organism=Citrus sinensis; type=EST; length=866bp
CTTTTTTTTCTATTGTCATTCCTTTTTTTCTCTCATTAAAAAAGTAAACC
CGGAAGAAAAAATAAGAAAAATTAAACCCAGTTCCTTTTTCCTGGCGTAT
TTTTAATTTGTATACCCTCCTTTTAATCTAATACTTTGTGTTTTCTCAAA
TTGAATCATTTGAGGGAAACAACTTTTCTCCACTTAGATTCGGTTGCCGT
TCTCGGGGCTCTGCTTACTCCGGTGCCAGTGAGAATCGGCTCTGATGGGA
GACATAGCCAAGGATCTATTTTCTGGGACTGTTGGAGGGGCAGCACAATT
AATATGTGGGCACCCATTTGATACCATCAAGGTCAAGCTTCAAAGCCAGC
CTGCTCCACTCCCTGGCCAACCTCCCAAGTATGCTGGTGCCATGGATGCT
GTCAAGCAAACCATAGCTGCCGAAGGGCCAAGGGGCTTGTACAAAGGTAT
GGGAGCTCCACTAGCTACTGTTGCCGCTTTTAATGCCCTCCTATTTACAG
TGAGAGGACAAATGGAGGCACTGCTCAGATCTCAACCTGGTGCCCCACTA
ACCCGTCAACCAGCAGATTATTTGCGGGGCTGGGGCTGGTGTTGCTGTTT
CTTTTCTTGCTTGCCCCACAGAATTGATTCCAATGCAGGTTGCAAGCCCA
AAGGGCATTAACAGGGTCTGGCAAATTGGGGGGGGCAGGGAAATATGGGG
GGACCAATCGCAAACGGCTAACCCTATACTTAAAATACAAACGCCGGCTT
ACGAGTCCCACCTACGGGACAGGGTTCACACAAAGAACACATATAGCCAC
CCGCGAAAACTTAAACTGACTAATCTGGCCGATCCGTCCCCTACCAGAGG
AGCCACCCCCCCCCGC
back to top