EY666392

Overview
NameEY666392
Unique NameEY666392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length479
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666392 vs. ExPASy Swiss-Prot
Match: SPTC1_PONAB (Serine palmitoyltransferase 1 OS=Pongo abelii GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.199e-26
Identity = 61/159 (38.36%), Postives = 86/159 (54.09%), Query Frame = 3
Query:    3 RGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKINTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIR 479
            RG+TEH G+ +D ID+++A M +ALA+ GGFC G + V+DHQRLS  GY F            I A++++EENP +   LK     +   L  I GL +   P SP   L LE+STGS + D++LL++I D  +               +KC  P  IR
Sbjct:  287 RGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCRQIHKALQGISGLKVVGEPLSPAFHLQLEESTGSREQDVRLLQEIVDQCMNRSIALTQARYLEKEEKCLPPPSIR 445          
BLAST of EY666392 vs. ExPASy Swiss-Prot
Match: SPTC1_MOUSE (Serine palmitoyltransferase 1 OS=Mus musculus GN=Sptlc1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.569e-25
Identity = 61/159 (38.36%), Postives = 87/159 (54.72%), Query Frame = 3
Query:    3 RGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKINTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIR 479
            RG+TEH G+ +D ID+++A M +ALA+ GGFC G + VVDHQRLS  GY F            I A++++EENPD+   LK     +   L  + GL +     SP + L LE+STGS + D++LL+ I D  + +             +KC  P  IR
Sbjct:  287 RGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPDIFAVLKKKCQNIHKSLQGVSGLKVVGESLSPALHLQLEESTGSREKDVKLLQAIVDQCMDKGIALTQARYLDKEEKCLPPPSIR 445          
BLAST of EY666392 vs. ExPASy Swiss-Prot
Match: SPTC1_HUMAN (Serine palmitoyltransferase 1 OS=Homo sapiens GN=SPTLC1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.962e-25
Identity = 60/159 (37.74%), Postives = 85/159 (53.46%), Query Frame = 3
Query:    3 RGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKINTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIR 479
            RG+TEH G+ +D ID+++A M +ALA+ GGFC G + V+DHQRLS  GY F            I A++++EENP +   LK     +   L  I GL +     SP   L LE+STGS + D++LL++I D  +               +KC  P  IR
Sbjct:  287 RGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCGQIHKALQGISGLKVVGESLSPAFHLQLEESTGSREQDVRLLQEIVDQCMNRSIALTQARYLEKEEKCLPPPSIR 445          
BLAST of EY666392 vs. ExPASy Swiss-Prot
Match: SPTC1_CRIGR (Serine palmitoyltransferase 1 OS=Cricetulus griseus GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.962e-25
Identity = 61/159 (38.36%), Postives = 86/159 (54.09%), Query Frame = 3
Query:    3 RGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKINTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIR 479
            RG+TEH G+ +D ID+++A M +ALA+ GGFC G + VVDHQRLS  GY F            I A++++EENP +   LK     +   L  I GL +     SP + L LE+STGS + D+QLL+++    + E             +KC  P  IR
Sbjct:  287 RGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKKKCQHIHKSLQGISGLKVVGESLSPALHLQLEESTGSREKDVQLLQEMVIHCMNEGIALTQARYLDKEEKCLPPPSIR 445          
BLAST of EY666392 vs. ExPASy Swiss-Prot
Match: SPTC1_MACFA (Serine palmitoyltransferase 1 OS=Macaca fascicularis GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.017e-24
Identity = 60/159 (37.74%), Postives = 85/159 (53.46%), Query Frame = 3
Query:    3 RGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKINTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIR 479
            RG+TEH G+ +D ID+++A M +ALA+ GGFC G + V+DHQRLS  GY F            I A++++EENP +   LK     +   L  I GL +     SP   L LE+STGS + D++LL++I D  +               +KC  P  IR
Sbjct:  287 RGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCRQIHKALQGISGLKVVGESLSPAFHLQLEESTGSREQDVRLLQEIVDQCMDRSIALTQARYLEKEEKCLPPPSIR 445          
BLAST of EY666392 vs. ExPASy Swiss-Prot
Match: SPTC1_BOVIN (Serine palmitoyltransferase 1 OS=Bos taurus GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.170e-22
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 3
Query:    3 RGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKINTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDI 389
            RG+TEH G+ +D ID+++A M ++LA+ GGFC G + V+DHQRLS  GY F            I A++++EENP +   LK     +   L  I GL +     SP + L LE++TG  + D++LL++I
Sbjct:  287 RGVTEHFGISIDDIDLISANMENSLASIGGFCCGRSFVIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCKRIHKALQGIPGLKVVGESISPALHLQLEETTGCRERDVKLLQEI 415          
BLAST of EY666392 vs. ExPASy Swiss-Prot
Match: SPTC1_DICDI (Serine palmitoyltransferase 1 OS=Dictyostelium discoideum GN=sptA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 60/158 (37.97%), Postives = 87/158 (55.06%), Query Frame = 3
Query:    3 RGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKINTAILRTGLSD---IHG-LSIASNPESPIVFLIL--EKSTGSMK-NDLQLLEDIADWALKEDGVFVVTSKRSMLDK 455
            RGLTEH  +  + +DI+T + G++ ++ GGFC GS  VV HQRL+  GYVF              AI++LEENP ++  L  N   L  GL+    ++G L I S P SP++ L L   KS  S + ND  LL+ I D A+ + G+ +  +K    +K
Sbjct:  285 RGLTEHYNIDTNLVDILTGSYGNSFSSGGGFCCGSPEVVYHQRLNGVGYVFSASLPPFLACSSTKAIEMLEENPKMLEMLHSNIGELYQGLNKSGALNGLLEITSLPISPVIHLSLLDSKSNKSNRINDELLLQKIVDKAM-DYGLLLTRAKYVSAEK 441          
BLAST of EY666392 vs. ExPASy Swiss-Prot
Match: LCB1_SCHPO (Serine palmitoyltransferase 1 OS=Schizosaccharomyces pombe GN=lcb1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.077e-14
Identity = 48/161 (29.81%), Postives = 81/161 (50.31%), Query Frame = 3
Query:    3 RGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAIDVL-EENPDLITKLKINTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR-SMLDKCRLPVGIR 479
            +GLTEH GVP   ++I+  ++  +LA  GGFC GS  +V+HQRLS   Y++              AI +L  +   ++  L+  +A+    LS       +S+ ESPI+ L  +    S    + LLE+I +  + E G  +  +KR   L++ ++   +R
Sbjct:  314 KGLTEHFGVPPTDVEIIIGSLTTSLAGGGGFCAGSELMVEHQRLSGMAYIYSAALPASLAVAAYEAISILSRDGGSMLNDLRSKSALFHAKLSRNKFFETSSDIESPIIHLRFKDKDISHDKQVFLLEEIVELCIAE-GFLIARAKRVESLERVKVQPSLR 473          
The following BLAST results are available for this feature:
BLAST of EY666392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SPTC1_PONAB9.199e-2638.36Serine palmitoyltransferase 1 OS=Pongo abelii GN=S... [more]
SPTC1_MOUSE1.569e-2538.36Serine palmitoyltransferase 1 OS=Mus musculus GN=S... [more]
SPTC1_HUMAN5.962e-2537.74Serine palmitoyltransferase 1 OS=Homo sapiens GN=S... [more]
SPTC1_CRIGR5.962e-2538.36Serine palmitoyltransferase 1 OS=Cricetulus griseu... [more]
SPTC1_MACFA1.017e-2437.74Serine palmitoyltransferase 1 OS=Macaca fascicular... [more]
SPTC1_BOVIN6.170e-2239.53Serine palmitoyltransferase 1 OS=Bos taurus GN=SPT... [more]
SPTC1_DICDI2.683e-1737.97Serine palmitoyltransferase 1 OS=Dictyostelium dis... [more]
LCB1_SCHPO8.077e-1429.81Serine palmitoyltransferase 1 OS=Schizosaccharomyc... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666392 ID=EY666392; Name=EY666392; organism=Citrus sinensis; type=EST; length=479bp
GCAGAGGCCTTACTGAGCATTGTGGAGTTCCGGTTGACAAGATAGATATT
GTAACTGCTGCTATGGGACATGCATTGGCCACTGAGGGGGGATTCTGCAC
GGGTAGTGCTCGAGTTGTTGATCACCAACGATTGAGCAGTTCTGGATATG
TTTTTTCTGCTTCTTTGCCCCCATACCTTGCGAGTGCTGCAATTACTGCT
ATTGATGTCCTTGAAGAAAATCCTGATTTGATAACAAAACTGAAGATAAA
CACTGCCATATTGCGGACAGGCTTATCGGATATTCATGGGCTCTCAATTG
CGAGTAACCCAGAATCACCCATTGTTTTTCTCATCCTAGAAAAGTCAACA
GGTTCAATGAAAAATGATCTACAGCTGCTTGAGGATATTGCTGATTGGGC
TTTGAAGGAAGACGGTGTATTTGTTGTCACTTCGAAAAGATCAATGCTCG
ATAAATGTCGTCTGCCTGTGGGAATTAGA
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