CN184305

Overview
NameCN184305
Unique NameCN184305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184305 vs. ExPASy Swiss-Prot
Match: FRI_PHAVU (Ferritin, chloroplastic OS=Phaseolus vulgaris GN=PFE PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.386e-20
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = -3
Query:  312 RNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA 479
            RN DPQ+A+F+ESEFL EQVEAI KI++YV+QLRMVGKGHG+WHFDQ LLH+G AA
Sbjct:  199 RNKDPQLADFIESEFLSEQVEAIKKISEYVAQLRMVGKGHGVWHFDQSLLHDGHAA 254          
BLAST of CN184305 vs. ExPASy Swiss-Prot
Match: FRI3_SOYBN (Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 42/56 (75.00%), Postives = 50/56 (89.29%), Query Frame = -3
Query:  312 RNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA 479
            +NND Q+A+F+ESEFLGEQVEAI KI++YV+QLR VGKGHG+WHFDQMLLHE   A
Sbjct:  200 KNNDVQLADFIESEFLGEQVEAIKKISEYVAQLRRVGKGHGVWHFDQMLLHEEGVA 255          
BLAST of CN184305 vs. ExPASy Swiss-Prot
Match: FRI1_ARATH (Ferritin-1, chloroplastic OS=Arabidopsis thaliana GN=FER1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.089e-18
Identity = 39/50 (78.00%), Postives = 48/50 (96.00%), Query Frame = -3
Query:  327 NNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLH 476
            NNDPQ+A+FVESEFLGEQ+EAI KI+ Y++QLRM+GKGHG+WHFDQMLL+
Sbjct:  206 NNDPQLADFVESEFLGEQIEAIKKISDYITQLRMIGKGHGVWHFDQMLLN 255          
BLAST of CN184305 vs. ExPASy Swiss-Prot
Match: FRI2_VIGUN (Ferritin-2, chloroplastic OS=Vigna unguiculata GN=PFE2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.858e-18
Identity = 40/53 (75.47%), Postives = 49/53 (92.45%), Query Frame = -3
Query:  321 RNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEG 479
            +N D Q+A+FVESEFLGEQVE+I +I++YV+QLR VGKGHG+WHFDQMLLHEG
Sbjct:  194 KNGDVQLADFVESEFLGEQVESIKRISEYVAQLRRVGKGHGVWHFDQMLLHEG 246          
BLAST of CN184305 vs. ExPASy Swiss-Prot
Match: FRI4_SOYBN (Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18
Identity = 42/57 (73.68%), Postives = 52/57 (91.23%), Query Frame = -3
Query:  312 RNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHE-GDAA 479
            +N D Q+A+FVE+E+LGEQVEAI +I++YV+QLR VGKGHG+WHFDQMLLHE GDAA
Sbjct:  191 KNGDVQLADFVETEYLGEQVEAIKRISEYVAQLRRVGKGHGVWHFDQMLLHEGGDAA 247          
BLAST of CN184305 vs. ExPASy Swiss-Prot
Match: FRI2_SOYBN (Ferritin-2, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18
Identity = 40/54 (74.07%), Postives = 49/54 (90.74%), Query Frame = -3
Query:  318 RNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGD 479
            RNNDPQ A+F+ESEFL EQV++I KIA+YV+QLR+VGKGHG+WHFDQ LLH+ D
Sbjct:  202 RNNDPQXADFIESEFLYEQVKSIKKIAEYVAQLRLVGKGHGVWHFDQKLLHDED 255          
BLAST of CN184305 vs. ExPASy Swiss-Prot
Match: FRI1_BRANA (Ferritin-1, chloroplastic OS=Brassica napus GN=LSC30 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18
Identity = 39/50 (78.00%), Postives = 48/50 (96.00%), Query Frame = -3
Query:  327 NNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLH 476
            NNDPQ+A+FVESEFLGEQ+EAI KI+ +++QLRMVGKGHG+WHFDQMLL+
Sbjct:  205 NNDPQLADFVESEFLGEQIEAIKKISDFITQLRMVGKGHGVWHFDQMLLN 254          
BLAST of CN184305 vs. ExPASy Swiss-Prot
Match: FRI3_VIGUN (Ferritin-3, chloroplastic OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.139e-18
Identity = 39/52 (75.00%), Postives = 48/52 (92.31%), Query Frame = -3
Query:  324 RNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHE 479
            RNND Q+A+F+ESEFL EQVE+I KIA+YV+QLR+VGKGHG+WHFDQ LLH+
Sbjct:  205 RNNDAQLADFIESEFLNEQVESIKKIAEYVTQLRLVGKGHGVWHFDQRLLHD 256          
BLAST of CN184305 vs. ExPASy Swiss-Prot
Match: FRI_MALXI (Ferritin, chloroplastic OS=Malus xiaojinensis PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = -3
Query:  330 RNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLL 479
            RNNDPQMA+F+ESEFL EQVE+I KI++YV+QLR VGKGHG+WHFDQ LL
Sbjct:  200 RNNDPQMADFIESEFLSEQVESIKKISEYVAQLRRVGKGHGVWHFDQRLL 249          
BLAST of CN184305 vs. ExPASy Swiss-Prot
Match: FRI1_SOYBN (Ferritin-1, chloroplastic OS=Glycine max PE=1 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = -3
Query:  330 RNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLL 479
            RNNDPQMA+F+ESEFL EQVE+I KI++YV+QLR VGKGHG+WHFDQ LL
Sbjct:  200 RNNDPQMADFIESEFLSEQVESIKKISEYVAQLRRVGKGHGVWHFDQRLL 249          
The following BLAST results are available for this feature:
BLAST of CN184305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FRI_PHAVU3.386e-2076.79Ferritin, chloroplastic OS=Phaseolus vulgaris GN=P... [more]
FRI3_SOYBN3.743e-1975.00Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1[more]
FRI1_ARATH1.089e-1878.00Ferritin-1, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI2_VIGUN1.858e-1875.47Ferritin-2, chloroplastic OS=Vigna unguiculata GN=... [more]
FRI4_SOYBN2.426e-1873.68Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2[more]
FRI2_SOYBN2.426e-1874.07Ferritin-2, chloroplastic OS=Glycine max PE=2 SV=1[more]
FRI1_BRANA2.426e-1878.00Ferritin-1, chloroplastic OS=Brassica napus GN=LSC... [more]
FRI3_VIGUN4.139e-1875.00Ferritin-3, chloroplastic OS=Vigna unguiculata PE=... [more]
FRI_MALXI1.573e-1778.00Ferritin, chloroplastic OS=Malus xiaojinensis PE=3... [more]
FRI1_SOYBN1.573e-1778.00Ferritin-1, chloroplastic OS=Glycine max PE=1 SV=4[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005E20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184305 ID=CN184305; Name=CN184305; organism=Citrus sinensis; type=EST; length=481bp
TTTTATTGAACAACTTAATTATATTTATACAATCAGAAGATGGATTTGGT
GCTCTGCTTAAACTATTAGATCCCTTCACACAGTCTGTTACTAAATAAAG
AAAAAGCACCATCAAAAAGACTATCTAAATGCGACCACACTAATATGATA
AAGCAAGGAGGCTATTGAGTATTAACTTTGTAGGACTTAACACTGTTTCA
GCTTATTTTTTGTCAACACACTCAACCTCCTGTGGCAGAGATACTTCAGA
ACATTTGGCAGAAAAGAGTTGACTAAAGCACAAAGAAATGTAACAATATG
GTTCTTCATCATGCAGCATCACCCTCGTGGAGAAGCATTTGATCGAAGTG
CCATAATCCGTGGCCTTTCCCAACCATCCTCAGTTGAGAAACATATTTTG
CGATCTTGTTAATTGCTTCAACCTGCTCACCCAAAAATTCACTCTCGACA
AACTCTGCCATTTGGGGATCATTGTTTCTAT
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