CN184292

Overview
NameCN184292
Unique NameCN184292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184292 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 6.821e-47
Identity = 82/102 (80.39%), Postives = 89/102 (87.25%), Query Frame = -3
Query:  149 GKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFCH 454
            GKGVCPVVGCRA+LL +CP  LQ RS  GHG VV CKS CEAF +DE CCRNHYNSPQTC+ SS+S+FFKHACPAT TYAHDSPSLMH+CSSPRELKVIFCH
Sbjct:  151 GKGVCPVVGCRANLLESCPAVLQFRSHGGHGPVVGCKSACEAFKSDEFCCRNHYNSPQTCKPSSYSQFFKHACPATFTYAHDSPSLMHECSSPRELKVIFCH 252          
BLAST of CN184292 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.212e-19
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  152 RGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 457
            +G G C   GC +DL   CP  LQVRS  G  RVVACKS C AF + + CC   + +PQ+C+ +++S+ FK ACP   +YA+D P+ +  CS    + V FC
Sbjct:  139 KGSGQCSYAGCVSDLNQMCPVGLQVRSRNGK-RVVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATCSKANYI-VTFC 238          
BLAST of CN184292 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.302e-17
Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  152 GKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 454
            G G C   GC +DL A CP  L+V        VVACKS CE F TD+ CCR   + P+TC  + +S  FK+ACP   +YA+D  +    C+     ++ FC
Sbjct:  142 GSGDCKYAGCVSDLNAACPDMLKVMD---QNNVVACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTG-ANYEITFC 238          
BLAST of CN184292 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.767e-16
Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = -3
Query:  152 GKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 454
            G G C    CRA++ A CP  LQV+       V+ACKS C AF   + CC   +++ +TC A+ +S  FK  CP   +YA+D  +    CS   +  + FC
Sbjct:  144 GTGDCKATSCRANVNAVCPAELQVKG--SDASVLACKSACTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFC 242          
BLAST of CN184292 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.226e-16
Identity = 42/102 (41.18%), Postives = 53/102 (51.96%), Query Frame = -3
Query:  152 GKGV-CPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 454
            G GV C    C AD+   CP  L+VR     GRV  C+S C A G D  CC   Y SP  CR + FS  FK  CP   +YA+D  + ++ C + R L + FC
Sbjct:  150 GGGVGCGTAACGADVNVCCPSALEVRDR--EGRVAGCRSACRAMGGDRYCCTGDYASPSACRPTIFSHLFKAICPRAYSYAYDDATSLNRCHAKRYL-ITFC 248          
BLAST of CN184292 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.812e-15
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = -3
Query:  152 GKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 454
            G G C    C A++ A CP  LQ +     G VVAC S C  FGT + CC    N+P+TC  +++SE F +ACP   +YA+D       C+      + FC
Sbjct:  146 GTGDCKTASCPANVNAVCPSELQKKG--SDGSVVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFC 244          
BLAST of CN184292 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.366e-15
Identity = 37/101 (36.63%), Postives = 54/101 (53.47%), Query Frame = -3
Query:  152 GKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 454
            G G C    C A++   CP  LQV++    G V++CKS C AFG  + CC    N+P+TC  + +SE F+  CP   +YA+D  +    CS   +  + FC
Sbjct:  147 GTGECKPSSCPANVNKVCPAPLQVKA--ADGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 245          
BLAST of CN184292 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.271e-15
Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = -3
Query:  152 GKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 454
            G G C    C A++   CP  LQV++    G V++CKS C AFG  + CC    ++P+TC  + +SE F+  CP   +YA+D  +    CS   +  + FC
Sbjct:  113 GTGECKPSSCPANVNMACPAQLQVKA--ADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 211          
BLAST of CN184292 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.003e-14
Identity = 38/101 (37.62%), Postives = 49/101 (48.51%), Query Frame = -3
Query:  152 GKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 454
            G G C    C AD+   CP  LQV+     G V+ACKS C AF   + CC    + P+TC    +S+ FK  CP   +YA+D  S    CS      + FC
Sbjct:  147 GTGKCKASTCPADINKVCPAPLQVKG--SDGSVIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFC 245          
BLAST of CN184292 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 34/101 (33.66%), Postives = 47/101 (46.53%), Query Frame = -3
Query:  152 GKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 454
            G G C    C A++   CP  L  +     G V+ CKS C A    + CC   Y +P TC  + FS+ FK+ CP   +YA+D  S    C      ++ FC
Sbjct:  145 GSGDCNSTSCAANINTVCPAELSDKG--SDGSVIGCKSACLALNQPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFC 243          
The following BLAST results are available for this feature:
BLAST of CN184292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
OLP1_SOLLC6.821e-4780.39Osmotin-like protein OS=Solanum lycopersicum PE=1 ... [more]
TLPH_ARATH1.212e-1944.12Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
PR5_ARATH3.302e-1740.59Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLP1_CASSA4.767e-1636.63Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
TLPH_ORYSJ6.226e-1641.18Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
TLP_PRUAV1.812e-1537.62Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TP1A_MALDO2.366e-1536.63Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TP1B_MALDO5.271e-1535.64Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TLP1_PRUPE2.003e-1437.62Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TLP1_PYRPY1.298e-1333.66Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005E13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184292 ID=CN184292; Name=CN184292; organism=Citrus sinensis; type=EST; length=471bp
AAGCTCACATTGATCATTTTTAATTTCTCTTTTTAGTTACGAGATTAATT
AAAAAGCAAGATACTGCTAATTGACGAAAACAAACACAACAATCCTAAGC
ACTGTGAAGCTTGATGCTCCAGCTTATTATTATTCTCATGCTTCTCTAGT
GACAGAAAATAACTTTTAGCTCACGTGGCGAGGAGCAGTCATGCATGAGC
GAAGGGCTGTCATGGGCATAAGTCATCGTGGCTGGACAAGCGTGCTTGAA
GAACTCCGAAAAGCTCGAAGCCCGGCATGTCTGCGGACTGTTGTAATGGT
TCCTACAACACAGCTCGTCCGTACCAAACGCCTCACACCCACTCTTACAT
GCCACCACGCGGCCGTGACCCGGCGGTGACCTCACCTGCAGGTTCTGAGG
ACACGTGGCTAGCAGGTCAGCGCGACAACCCACTACCGGACAGACGCCCT
TGCCCCTCGTGCGGGGTGACA
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