EY666389

Overview
NameEY666389
Unique NameEY666389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY666389 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.887e-70
Identity = 139/206 (67.48%), Postives = 169/206 (82.04%), Query Frame = 3 
Query:   54 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLERKPHPGAGRLNNPGMIGK-----GWENTWGTIMSWGTSLM 656
            L+GELSATA+NAPMV  EVLSEL PY+VLA+KLGRLAVQL SGG G++S++++YRSARD DDLDTR+LRAMITKGIIEPIS S++NLVNADF AKQKGLRISEER+V DSSPE+P+DSIQVQ+ NV+S FA AVS+ G+ISIEGKVK+G+PHLT VGSFGVD SLE        +++ PGMIG+     G +N     MS G +++
Sbjct:  384 LKGELSATAVNAPMVAPEVLSELTPYIVLAEKLGRLAVQLASGGKGVQSIRVVYRSARDRDDLDTRLLRAMITKGIIEPISDSYVNLVNADFIAKQKGLRISEERMVVDSSPEYPVDSIQVQILNVESNFAGAVSDAGDISIEGKVKYGVPHLTCVGSFGVDVSLEGNLIL-CRQVDQPGMIGQVGNILGEQNVNVNFMSVGRTVL 588
[Close]
BLAST of EY666389 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12
Identity = 45/145 (31.03%), Postives = 79/145 (54.48%), Query Frame = 3 
Query:   54 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFA--AAVSENGEISIE 482
            LRGEL+   +N P +P E L +L PY++LA+ LG + +Q++ G   +  V+LIY      +  D  +++    KG++ PI  + INLVNA   AK + + + E    + +S E   ++I++   +   KF+   A+  N  + +E
Sbjct:  302 LRGELAENVVNMPNIPQEKLGKLKPYMLLAEMLGNIVMQVLDG--SVNRVELIYSGELAKEKTD--LIKRAFLKGLLSPILLAGINLVNAPIIAKNRNINVVE----SSTSEEKYGNAIKITAESDKKKFSIVGAIINNKPVILE 438
The following BLAST results are available for this feature:
BLAST of EY666389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SERA_ARATH2.887e-7067.48D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA2.746e-1231.03D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666389 ID=EY666389; Name=EY666389; organism=Citrus sinensis; type=EST; length=848bp
AAATGTATCAGGAAGGTGTAGCTATTGAAATAGCAGAGGCTGTGGTCGGA
GCATTGAGAGGAGAGCTTTCTGCTACTGCAATCAATGCTCCCATGGTTCC
ATCAGAGGTGTTGTCGGAGTTGGCTCCTTATGTTGTGCTAGCTAAGAAGC
TTGGCAGGCTGGCTGTGCAGTTGGTATCCGGAGGGAGTGGCATTAAGTCT
GTGAAGCTTATCTACCGATCAGCTCGTGACCCTGATGACTTGGACACAAG
AATTCTCCGAGCTATGATCACAAAAGGCATCATTGAACCGATATCAGCCT
CGTTCATCAACCTTGTCAATGCAGATTTCACAGCTAAACAGAAAGGCCTC
CGGATTAGCGAAGAGCGTGTGGTAGCTGACTCGTCCCCTGAGTTCCCTAT
CGATTCAATCCAGGTTCAGTTATCCAACGTGGATTCCAAATTTGCAGCTG
CTGTTTCAGAAAATGGAGAGATAAGCATTGAAGGGAAAGTGAAATTTGGG
ATACCTCACCTGACACGCGTGGGATCATTTGGTGTTGATGCGAGCCTGGA
AAGGAAACCTCATCCTGGGGCCGGCAGGTTGAATAACCCTGGCATGATTG
GCAAAGGTTGGGAAAATACTTGGGGGACCATAATGTCATGGGGAACTTCC
TTGATGGAAGGAAGAACTTTCCGGAAGGAATCCTGGGAATTTGTGGAATC
GGGGTTAATAAAAAAAACCAAATACGGGTTTTCCCCTCAGAAAATAGGAA
AAGGTGGCTCGCCTATTGGAAAAATTTGGATTTTCCCAAAACCTTTGAAT
TCGATGGAAAGAAGTCTAAAAAAAATAATTGGGTTTTCTCGAAACCGA
back to top