EY666386

Overview
NameEY666386
Unique NameEY666386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY666386 vs. ExPASy Swiss-Prot
Match: YAFC_ECOLI (Uncharacterized HTH-type transcriptional regulator yafC OS=Escherichia coli (strain K12) GN=yafC PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.509e-13
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 1 
Query:   28 VDVIGEGYDAVVRSGEMQDSGLKRRRLGPFRRILAASPDYLARHGTPRRASDLLRHCCLHYRYPSTGKLEQWPLKTAAGAPPPELPLTLVCNSVETRIFLAVGGLGIVCLPDFTVREELAR 390
            +++I    D  +R+G + DS L+ R L    R + ASPDY++R+G P    DL +H CL +  P++  L  WP+  + G    E+   L  NS ET   L + G GI CL D+ + +E+AR
Sbjct:  133 INLIERKVDVAIRAGTLTDSSLRARPLFNSYRKIIASPDYISRYGKPETIDDLKQHICLGFTEPAS--LNTWPIARSDG-QLHEVKYGLSSNSGETLKQLCLSGNGIACLSDYMIDKEIAR 250
The following BLAST results are available for this feature:
BLAST of EY666386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YAFC_ECOLI1.509e-1336.36Uncharacterized HTH-type transcriptional regulator... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-C11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666386 ID=EY666386; Name=EY666386; organism=Citrus sinensis; type=EST; length=864bp
CCACTGCAGTACGGTCCGGATTCCCGGGTCGACGTGATCGGCGAGGGCTA
TGACGCCGTGGTGCGCTCCGGCGAGATGCAGGATTCCGGCCTGAAGCGCC
GCCGCCTGGGGCCGTTCCGCCGCATCCTGGCGGCCTCGCCCGATTACCTG
GCGCGGCACGGCACCCCGCGCCGCGCCAGCGACCTGCTGCGCCACTGCTG
CCTGCACTATCGCTATCCCAGCACCGGCAAGCTGGAGCAATGGCCGCTGA
AGACGGCGGCCGGCGCGCCGCCGCCCGAGTTGCCGCTGACGCTGGTCTGC
AACAGCGTCGAGACCCGCATCTTCCTGGCGGTGGGCGGGCTGGGGATCGT
CTGCCTGCCGGATTTCACCGTCCGGGAAGAGCTGGCCCGCCGGGCAACCT
GGTGACGGTGCCGGACGAACGCACCACGGGCCCCGGCATCTGTGGGGGGG
GGGAGCACTACCCCGCACCCGACTCCGTGGCCCAACCGGGGAGGGACGGT
CAAACCCACGGGACGGAAGAGAAGGCGGAGACGAAGCGGATCACCCTCAG
ACCGCACCCCACAACTCTACACTCCGAAGACCCTCGTCACAACCCCCTGA
CTCCTACACGCGCAAACACTCCCACACTACAGCGCCCCCACCCGCCCCCA
CCACCACACGCCCCCTGACCAAGGCCGCTGACAGACCGCCCGACCACGCG
AGCACCTAGAGACGGCGCCACACCGGAGCCACACGCCGCGCTGCACCCGC
CGAGCCCCCCTCCCCTGTCAGCCCCAACACCATGACGCGACAAACCCCCA
CCCCCACCCACACGCAGGGCCAGCACCGTCGCGCCTACACAGCCATGCCG
TACCCGCCACAGAG
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