CX676578

Overview
NameCX676578
Unique NameCX676578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676578 vs. ExPASy Swiss-Prot
Match: P2C78_ORYSJ (Probable protein phosphatase 2C 78 OS=Oryza sativa subsp. japonica GN=Os12g0580900 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = -2
Query:  269 GIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQKGSSNSRSKHNAIGCTSAPVDIFSLNADEAEDDVQHMLHPL 544
            GIAKRLVRAAL EAARKRE+ Y +IK ++RG RR+FHDDITV+V+YLDHH+ G   +    N+   T+APVDIFS +++E +       HPL
Sbjct:  296 GIAKRLVRAALTEAARKREMRYTDIKHIERGSRRNFHDDITVVVVYLDHHKHGVRPNLGNRNSFRFTNAPVDIFSGSSEEVDH------HPL 381          
BLAST of CX676578 vs. ExPASy Swiss-Prot
Match: P2C63_ARATH (Probable protein phosphatase 2C 63 OS=Arabidopsis thaliana GN=At4g33920 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.380e-21
Identity = 51/82 (62.20%), Postives = 67/82 (81.71%), Query Frame = -2
Query:  299 GIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQKGSSNSRSKHNAIGCTSAPVDIFSLNADEAE 544
            GIA+RLVRAAL+EAA+KRE+ Y +IKK+ +GIRRHFHDDI+VIV+YLD ++  SSNS+      G  +AP DI+SL++DEAE
Sbjct:  292 GIARRLVRAALEEAAKKREMRYGDIKKIAKGIRRHFHDDISVIVVYLDQNKTSSSNSKLVKQ--GGITAPPDIYSLHSDEAE 371          
BLAST of CX676578 vs. ExPASy Swiss-Prot
Match: P2C34_ORYSJ (Probable protein phosphatase 2C 34 OS=Oryza sativa subsp. japonica GN=BIPP2C2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20
Identity = 45/86 (52.33%), Postives = 69/86 (80.23%), Query Frame = -2
Query:  287 GIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQKGSSNSRSKHNAIGCTSAPVDIFSLNADEAEDDVQ 544
            GIA RLV+AAL+EA RKREV ++++K +++G+RRHFHDDI+VIV+YLD H +G  ++R   ++  CT+APVDI+S N+ ++ + +Q
Sbjct:  289 GIANRLVKAALKEATRKREVSFRDLKTIEKGVRRHFHDDISVIVVYLDRH-RGRRHTRVVDSSSNCTNAPVDIYSSNSGQSVETLQ 373          
BLAST of CX676578 vs. ExPASy Swiss-Prot
Match: P2C34_ORYSI (Probable protein phosphatase 2C 34 OS=Oryza sativa subsp. indica GN=BIPP2C2 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20
Identity = 45/86 (52.33%), Postives = 69/86 (80.23%), Query Frame = -2
Query:  287 GIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQKGSSNSRSKHNAIGCTSAPVDIFSLNADEAEDDVQ 544
            GIA RLV+AAL+EA RKREV ++++K +++G+RRHFHDDI+VIV+YLD H +G  ++R   ++  CT+APVDI+S N+ ++ + +Q
Sbjct:  289 GIANRLVKAALKEATRKREVSFRDLKTIEKGVRRHFHDDISVIVVYLDRH-RGRRHTRVVDSSSNCTNAPVDIYSSNSGQSVETLQ 373          
BLAST of CX676578 vs. ExPASy Swiss-Prot
Match: P2C42_ARATH (Probable protein phosphatase 2C 42 OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.625e-16
Identity = 34/59 (57.63%), Postives = 47/59 (79.66%), Query Frame = -2
Query:  374 GIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHH--QKGSSNS 544
            G AKRL++AAL EAARKRE+ Y +++K+ + +RRHFHDDITVIV++L+H    +G  NS
Sbjct:  312 GSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDITVIVVFLNHDLISRGHINS 370          

HSP 2 Score: 33.8834 bits (76), Expect = 1.625e-16
Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = -1
Query:  663 GLWEQLTDEAAVEIVCKNPRAVS 731
            GLWE LT+E AVEIV  +PRA S
Sbjct:  291 GLWEHLTNEKAVEIVHNHPRAGS 313          
BLAST of CX676578 vs. ExPASy Swiss-Prot
Match: P2C29_ORYSJ (Probable protein phosphatase 2C 29 OS=Oryza sativa subsp. japonica GN=Os03g0207400 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.592e-15
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = -2
Query:  278 GIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQKGSSNSRSKHNAIGCTSAPVDIFSLNADEAEDDVQHML 544
            G+A RLVRAA  EAARK++V Y+ I+ +++G RRHFHDDITV+V++LD           + + I  T  PVD+FSL+ D+ ED  + +L
Sbjct:  307 GVAMRLVRAAQLEAARKKDVKYERIRTIEKGQRRHFHDDITVVVLFLDK----CRGKAGRGDEIDGTDGPVDVFSLSPDDREDPTRPVL 391          
BLAST of CX676578 vs. ExPASy Swiss-Prot
Match: P2C61_ORYSJ (Probable protein phosphatase 2C 61 OS=Oryza sativa subsp. japonica GN=Os07g0114000 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 37/81 (45.68%), Postives = 57/81 (70.37%), Query Frame = -2
Query:  317 GIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQKGSSNSRSKHNAI-----GCTSAPVDIFSL 544
            G+A RLV+AAL EAARKREV   ++++++RG+RRHFHDDIT +V++LD    G   +R +   +      C++ P+D++SL
Sbjct:  292 GVAARLVQAALGEAARKREVRRGDLRRIERGVRRHFHDDITAVVVFLDLDDDGGRRARRRGRVVDSSSSSCSNTPLDVYSL 372          
BLAST of CX676578 vs. ExPASy Swiss-Prot
Match: P2C36_ORYSJ (Probable protein phosphatase 2C 36 OS=Oryza sativa subsp. japonica GN=Os03g0832400 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.372e-15
Identity = 32/66 (48.48%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  347 GIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQKGSSNSRSKHNAIGC 544
            G A+RL++AAL EAARKRE+ Y ++ K+ + +RRHFHDDITVIV+++++ Q    +S+ +  +I C
Sbjct:  317 GSARRLIKAALHEAARKREMRYSDLMKIDKKVRRHFHDDITVIVLFINYDQLAKGHSQGQSLSIRC 382          

HSP 2 Score: 28.1054 bits (61), Expect = 6.372e-15
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = -1
Query:  663 GLWEQLTDEAAVEIVCKNPRAVS 731
            GLWE L+++ AVEIV  + RA S
Sbjct:  296 GLWEHLSNQQAVEIVHNHQRAGS 318          
BLAST of CX676578 vs. ExPASy Swiss-Prot
Match: P2C38_ARATH (Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = -2
Query:  371 GIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQKGSSNSR 544
            GIA++L++ AL+EAA+KRE+ Y ++KK+ RG+RRHFHDDITVIV++LD H    S SR
Sbjct:  311 GIARKLIKTALREAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRSTSR 368          
BLAST of CX676578 vs. ExPASy Swiss-Prot
Match: P2C46_ARATH (Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 35/54 (64.81%), Postives = 48/54 (88.89%), Query Frame = -2
Query:  383 GIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQKGS 544
            GIA+RLV+ ALQEAA+KRE+ Y ++KK++RG+RRHFHDDITV++I+LD +Q  S
Sbjct:  307 GIARRLVKMALQEAAKKREMRYSDLKKIERGVRRHFHDDITVVIIFLDTNQVSS 360          
The following BLAST results are available for this feature:
BLAST of CX676578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
P2C78_ORYSJ3.313e-2156.52Probable protein phosphatase 2C 78 OS=Oryza sativa... [more]
P2C63_ARATH7.380e-2162.20Probable protein phosphatase 2C 63 OS=Arabidopsis ... [more]
P2C34_ORYSJ2.147e-2052.33Probable protein phosphatase 2C 34 OS=Oryza sativa... [more]
P2C34_ORYSI2.147e-2052.33Probable protein phosphatase 2C 34 OS=Oryza sativa... [more]
P2C42_ARATH1.625e-1657.63Probable protein phosphatase 2C 42 OS=Arabidopsis ... [more]
P2C29_ORYSJ1.592e-1547.19Probable protein phosphatase 2C 29 OS=Oryza sativa... [more]
P2C61_ORYSJ6.051e-1545.68Probable protein phosphatase 2C 61 OS=Oryza sativa... [more]
P2C36_ORYSJ6.372e-1548.48Probable protein phosphatase 2C 36 OS=Oryza sativa... [more]
P2C38_ARATH1.032e-1460.34Probable protein phosphatase 2C 38 OS=Arabidopsis ... [more]
P2C46_ARATH1.348e-1464.81Probable protein phosphatase 2C 46 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G12-M24-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676578 ID=CX676578; Name=CX676578; organism=Citrus sinensis; type=EST; length=731bp
TTTTTTTTTTTTTTTTTACAAAACTTGTGCTTGAAATTTCTGGGATTCAC
TATATCAATTTTGAACAAAGACAAGATCAATAACATAACCAACAAAACAA
AAGAACAATGGTGTTGGATCTTCACTTGGAAAAATCTACTGCAGCTTGTT
TCCAACAGCAACCTATCTACAGAAATTGCCTGCGTATACCTCACCATGTA
CTCATAACCTTATTGAAATTTCTATGCGTCAGTGCCTGACCATTTAGAAA
GTGGTTTACTTATGCAGGAAGCGGGTGAAGCATATGCTGCACATCATCTT
CTGCTTCATCTGCATTTAGGGAGAAGATGTCGACAGGTGCACTTGTGCAG
CCAATGGCATTGTGTTTGGATCTGCTGTTGGAGGAGCCTTTTTGATGATG
ATCAAGATAAATTACAATTACTGTAATATCGTCATGGAAATGTCTCCTTA
TTCCCCTTTTGAGTTTCTTTATCTCCTTATATCCCACCTCTCTCTTCCTT
GCAGCCTCTTGAAGGGCAGCTCTCACCAATCTCTTTGCAATTCCCTACAA
ACTCAAAAACAACCACCACCGTTGTGAGTATTATATTTCTTTTTATCAAA
TTGATCAACCAAAAACATCTAGTTCATTTCCTATTCAAAATGGAAGGGGT
GTCAAGATGAGTACTCACAGCTCTTGGGTTCTTACAAACAATTTCTACTG
CTGCTTCATCAGTTAACTGTTCCCAAAGGCC
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