EY666378

Overview
NameEY666378
Unique NameEY666378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666378 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.248e-27
Identity = 83/238 (34.87%), Postives = 125/238 (52.52%), Query Frame = 2
Query:   11 AVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKD------GEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ-PDGQLPKCFRYGSEKWRNWAAVIIQQAWCRQRKKKFQTSL-----------------------LAVTPSRFAVTSLRPITAEATWRDP*STKK*REMTSLPEAMVDWN 634
            A+L  VPM ++MDEQ ++A+      V YT+  ++V+EG+PV+++ L ++ G  L+ ++    T   +      G+FCGEEL++WA+D  S S+   P STRTV A+ +V+AF+++A DLK   +Q R+    QL   FRY S++W+ WAA  IQ AW R  KKK + SL                         +  SRFA   LR I    + R P   ++   M     A  D+N
Sbjct:  479 ALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEM-LFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSN--LPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRYIKKKLEESLKEEENRLQDALAKEACGSSPSLGATIYASRFAANILRTIRRSGSVRKPRMPERMPPMLLQKPAEPDFN 713          
BLAST of EY666378 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.169e-26
Identity = 71/184 (38.59%), Postives = 112/184 (60.87%), Query Frame = 2
Query:   11 AVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVG--GDTLSWSSTSVFTPR---KDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ-PDGQLPKCFRYGSEKWRNWAAVIIQQAWCRQ-RKKKFQTSLLAVTPSRFAVTSLR 541
            A+++ VP+ + MDE+ ++AI        YT+  +LV+EG+PVN++  I+ G      +    S F  R   K+G+FCGEEL++WA+D +S S+   P STRT +A+T+V+AF++ A +LK   +Q R+    Q+   FR+ S++WR WAA+ IQ AW R  +KKK +           +VTS+R
Sbjct:  506 ALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSN--LPSSTRTAKALTEVEAFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRYVKKKKLEQLRKEEEEGEGSVTSIR 687          
BLAST of EY666378 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.169e-26
Identity = 67/173 (38.73%), Postives = 106/173 (61.27%), Query Frame = 2
Query:   14 VLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVG--------GDTLSWSSTSVFTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ-PDGQLPKCFRYGSEKWRNWAAVIIQQAWCRQRKKKFQTSLLA 505
            +++ VP+  +MDE+ ++AI         T+G FLV+EG+PVN++  I+ G        G    + ++ +  P   G+FCGEEL++WA+D +     + P STRTV+A+ +V+AF+++A DL+   +Q R+    QL   FR+ S +WR WAA  IQ AW R RK+K++T L A
Sbjct:  465 LVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCLIGP---GDFCGEELLTWALDPRP--VVILPSSTRTVKAICEVEAFALKAEDLQFVASQFRRLHTKQLRHKFRFYSHQWRTWAACFIQAAWRRHRKRKYKTELRA 632          
BLAST of EY666378 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.578e-26
Identity = 67/168 (39.88%), Postives = 101/168 (60.12%), Query Frame = 2
Query:   14 VLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVG---GDTLSWSSTSVFTP--RKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ-PDGQLPKCFRYGSEKWRNWAAVIIQQAWCRQRKKKFQTSL 499
            +LK+VP+ + MDEQ ++A+      V YT+  + ++EG+PV ++  ++ G     T +   T  F     K  +FCGE+L++WA+D QS S   FP STRTV+A+T+V+AF++ A DLK   +Q R+    QL   FR+ S +WR W A  IQ AW R  ++K   SL
Sbjct:  468 LLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSH--FPISTRTVQALTEVEAFALAADDLKLVASQFRRLHSKQLQHTFRFYSVQWRTWGASFIQAAWRRHCRRKLARSL 633          
BLAST of EY666378 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.293e-25
Identity = 64/163 (39.26%), Postives = 104/163 (63.80%), Query Frame = 2
Query:   14 VLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVG--GDTLSWSSTSVFTPR---KDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ-PDGQLPKCFRYGSEKWRNWAAVIIQQAWCRQRKKK 484
            +++ VP+   MDE+ ++AI        YT+  ++V+EG+PVN++  I+ G      +    S F  R   K+G+FCGEEL++WA+D ++ S+   P STRTV+A+T+V+AF++EA +LK   +Q R+    Q+ + FR+ S++WR WAA  IQ AW R  ++K
Sbjct:  502 LVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSN--LPSSTRTVKALTEVEAFALEAEELKFVASQFRRLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRHLRRK 662          
BLAST of EY666378 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.688e-25
Identity = 66/168 (39.29%), Postives = 101/168 (60.12%), Query Frame = 2
Query:   14 VLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVG---GDTLSWSSTSVFTP--RKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDGQ-LPKCFRYGSEKWRNWAAVIIQQAWCRQRKKKFQTSL 499
            +++ VP+  +MD+Q ++AI         TQG ++V+EG+PV ++  I+ G     T +   T  F     + G+FCGEEL++WA+  +S  +   P STRTV A+ +V+AF+++AGDLK   NQ R+   + L   FRY S +WR WAA  +Q AW R ++KK   SL
Sbjct:  475 LVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVN--LPSSTRTVRALEEVEAFALQAGDLKFVANQFRRLHSKKLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSL 640          
BLAST of EY666378 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.761e-25
Identity = 65/168 (38.69%), Postives = 101/168 (60.12%), Query Frame = 2
Query:   14 VLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVG---GDTLSWSSTSVFTP--RKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ-PDGQLPKCFRYGSEKWRNWAAVIIQQAWCRQRKKKFQTSL 499
            +LK+VP+ + MDEQ ++A+      V YT+  ++++EG+PV ++  ++ G     T +   +  F     K  +FCGE+L+ WA+D QS S   FP STRTV+A+T+V+AF++ A DLK   +Q R+    QL   FR+ S +WR W+   IQ AW R  ++K   SL
Sbjct:  467 LLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSH--FPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQLQHTFRFYSVQWRTWSVSFIQAAWRRYCRRKLAKSL 632          
BLAST of EY666378 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.912e-25
Identity = 62/163 (38.04%), Postives = 104/163 (63.80%), Query Frame = 2
Query:   14 VLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVG--GDTLSWSSTSVFTPR---KDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ-PDGQLPKCFRYGSEKWRNWAAVIIQQAWCRQRKKK 484
            +++ VP+   MDE+ ++AI        +T+  ++V+EG+PVN++  I+ G      +    S F  R   K+G+FCGEEL++WA+D ++ S+   P STRTV+A+T+V+AF++EA +LK   +Q R+    Q+ + FR+ S++WR WA+  IQ AW R  ++K
Sbjct:  496 LVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSN--LPSSTRTVKALTEVEAFALEAEELKFVASQFRRLHSRQVQQTFRFYSQQWRTWASCFIQAAWRRYSRRK 656          
BLAST of EY666378 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 8.379e-25
Identity = 64/164 (39.02%), Postives = 104/164 (63.41%), Query Frame = 2
Query:   11 AVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVG--GDTLSWSSTSVFTPR---KDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ-PDGQLPKCFRYGSEKWRNWAAVIIQQAWCRQRKKK 484
            A+++ VP+ + MDE+ ++AI        +T+  +LV+EG+PVN++  I+ G      +    S F  R   K+G+FCG+EL++WA+D +S S+   P STRTV+A+T+V+AF++ A +LK   +Q R+    Q+   FR+ S++WR WAA  +Q AW R  K+K
Sbjct:  507 ALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSN--LPSSTRTVKALTEVEAFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFMQAAWRRYIKRK 668          
BLAST of EY666378 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.093e-24
Identity = 63/164 (38.41%), Postives = 102/164 (62.20%), Query Frame = 2
Query:   11 AVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVG--GDTLSWSSTSVFTPR---KDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ-PDGQLPKCFRYGSEKWRNWAAVIIQQAWCRQRKKK 484
            A+++ VP+ + MD++ ++AI        +T+  +LV+EG+PV+++  I+ G      +    S F  R   K+GEFCGEEL++WA+D +S  +   P STRTV+A+T+V+AF++ + +LK   +Q R+    Q+   FR+ S +WR WAA  IQ AW R  K+K
Sbjct:  491 ALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVN--LPSSTRTVKALTEVEAFALTSEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFIQAAWRRYCKRK 652          
The following BLAST results are available for this feature:
BLAST of EY666378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CNGC1_ARATH5.248e-2734.87Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC9_ARATH1.169e-2638.59Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNG15_ARATH1.169e-2638.73Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNG13_ARATH7.578e-2639.88Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC8_ARATH1.293e-2539.26Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNG14_ARATH1.688e-2539.29Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNG10_ARATH3.761e-2538.69Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNGC7_ARATH4.912e-2538.04Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC6_ARATH8.379e-2539.02Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC5_ARATH7.093e-2438.41Probable cyclic nucleotide-gated ion channel 5 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-C02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666378 ID=EY666378; Name=EY666378; organism=Citrus sinensis; type=EST; length=857bp
CCACGCGTCCGCGGTACTCAAGGAGGTACCCATGCTTCAAAGGATGGATG
AACAACGAATGAATGCAATATTGTACCATTTCAATCTAGTGCCATACACG
CAAGGAATGTTCCTTGTTCAGGAAGGTAACCCAGTTAACAAGCTGCAACT
CATTGTCGTTGGAGGCGACACATTGAGCTGGAGCTCGACTAGTGTCTTTA
CCCCGCGCAAAGACGGTGAATTTTGCGGAGAAGAGCTTGTGTCATGGGCT
GTGGATCAGCAGTCAGACAGCAGTACTGTTTTCCCCAGATCAACTAGAAC
TGTTGAAGCTGTTACTCAAGTGGATGCCTTTTCCATTGAGGCTGGTGACC
TGAAGGAATTTGTAAATCAGTGCCGACAACCCGATGGTCAGCTTCCTAAG
TGTTTCAGGTATGGCTCAGAAAAGTGGAGGAATTGGGCTGCTGTGATCAT
ACAGCAAGCCTGGTGCCGCCAGAGGAAGAAAAAGTTTCAAACATCTTTGC
TTGCTGTAACTCCCTCACGGTTCGCGGTTACTTCACTTCGTCCCATAACG
GCAGAGGCTACCTGGAGGGACCCCTAATCCACCAAGAAATAAAGGGAAAT
GACAAGCTTACCAGAAGCCATGGTGGACTGGAATAAAAGAATTTTCAATA
CACCCTAAATTTAAGTAACGTAAAAAACAACCTTTCTCATCCTCCTTCCT
GACACCAAGTCTCACAGGGTCCCATCGCCTCCGCTACTCAACCACTTACC
CCATAAGTTCCACATCTCAACAGCCACTTCCGATTCATAGCGGGTCTCCC
TTCCACTTAAACACCAACCAGACACTAGTACCCCAAATTCCTCCACACCT
AAAACAC
back to top