CN184198

Overview
NameCN184198
Unique NameCN184198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184198 vs. ExPASy Swiss-Prot
Match: TF2B_SOYBN (Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.337e-25
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = -1
Query:  358 KNISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 492
            K+IS+ATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP
Sbjct:  269 KDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313          

HSP 2 Score: 40.4318 bits (93), Expect = 6.337e-25
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = -3
Query:  488 AAAVIYIITQLSDDKKPLKE 547
            AAAVIYIITQLSDDKKPLK+
Sbjct:  251 AAAVIYIITQLSDDKKPLKD 270          
BLAST of CN184198 vs. ExPASy Swiss-Prot
Match: TF2B2_ARATH (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.707e-21
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = -1
Query:  358 KNISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 492
            ++ISVATGVAEGTIRNSYKDLYPH+SKIIP WYAKEEDLKNL SP
Sbjct:  268 RDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312          

HSP 2 Score: 37.7354 bits (86), Expect = 1.707e-21
Identity = 17/20 (85.00%), Postives = 20/20 (100.00%), Query Frame = -3
Query:  488 AAAVIYIITQLSDDKKPLKE 547
            AAAVIYIITQLSD+KKPL++
Sbjct:  250 AAAVIYIITQLSDEKKPLRD 269          
BLAST of CN184198 vs. ExPASy Swiss-Prot
Match: TF2B_ORYSJ (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.890e-21
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = -1
Query:  358 KNISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 492
            K+IS+ATGVAEGTIRNSYKDLYP+ S++IPN YAKEEDLKNLC+P
Sbjct:  268 KDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLCTP 312          

HSP 2 Score: 39.2762 bits (90), Expect = 4.890e-21
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = -3
Query:  488 AAAVIYIITQLSDDKKPLKE 547
            AAAVIY+ITQLSDDKKPLK+
Sbjct:  250 AAAVIYMITQLSDDKKPLKD 269          
BLAST of CN184198 vs. ExPASy Swiss-Prot
Match: TF2B1_ARATH (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.821e-20
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = -1
Query:  358 KNISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 492
            K+IS ATGVAEGTIRNSYKDLYPH+SKI P+WYAKEEDLKNL SP
Sbjct:  268 KDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312          

HSP 2 Score: 35.8094 bits (81), Expect = 1.821e-20
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = -3
Query:  488 AAAVIYIITQLSDDKKPLKE 547
            AA VIYIITQLSDDKK LK+
Sbjct:  250 AAVVIYIITQLSDDKKTLKD 269          
The following BLAST results are available for this feature:
BLAST of CN184198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TF2B_SOYBN6.337e-2595.56Transcription initiation factor IIB OS=Glycine max... [more]
TF2B2_ARATH1.707e-2188.89Transcription initiation factor IIB-2 OS=Arabidops... [more]
TF2B_ORYSJ4.890e-2182.22Transcription initiation factor IIB OS=Oryza sativ... [more]
TF2B1_ARATH1.821e-2086.67Transcription initiation factor IIB-1 OS=Arabidops... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005C10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184198 ID=CN184198; Name=CN184198; organism=Citrus sinensis; type=EST; length=549bp
AACAGCAATCCAACTTTCCTAGGTTACTGTACAAGATCATTATTTTAAAC
TTTATTAGGTAAAACAATGTAAATAAATTAAGCATAAATTGAAAAATAAA
CTTGTATTAGCTCCTCTCTGTCTCTCTCCCCCTTCTCTCTGTCTCTCTCT
CTTCACTTTTTTTGACTTTTTGTCAATATTTGTAAATTAAAGGTTGCAAT
GCAGTCAACTGCACAAAGACAAAACAGTCAAGAAAATAAGTACGAAAATC
CTCGTAAATAGGATGCTGACAGATTCTGAATACATCAACGTGAGGGCAGT
TCAAACCACTCAAGATGCTTGTTTCACGGTGTTGTTATTCATGCGCTCTA
CATTTTACGGGCTGCAAAGGTTTTTAAGATCCTCTTCCTTGGCATACCAG
TTTGGTATTATCTTTGAGACATGAGGATAAAGATCCTTGTACGAATTTCT
GATTGTCCCCTCAGCAACTCCAGTAGCAACAGAAATATTCTTTGAGCGGC
TTCTTGTCATCTGAAAGCTGAGTTATAATATAAATAACTGCAGCTGCAA
back to top