CN184198
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184198 vs. ExPASy Swiss-Prot
Match: TF2B_SOYBN (Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.337e-25 Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = -1 Query: 358 KNISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 492 K+IS+ATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP Sbjct: 269 KDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313 HSP 2 Score: 40.4318 bits (93), Expect = 6.337e-25 Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = -3 Query: 488 AAAVIYIITQLSDDKKPLKE 547 AAAVIYIITQLSDDKKPLK+ Sbjct: 251 AAAVIYIITQLSDDKKPLKD 270
BLAST of CN184198 vs. ExPASy Swiss-Prot
Match: TF2B2_ARATH (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.707e-21 Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = -1 Query: 358 KNISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 492 ++ISVATGVAEGTIRNSYKDLYPH+SKIIP WYAKEEDLKNL SP Sbjct: 268 RDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312 HSP 2 Score: 37.7354 bits (86), Expect = 1.707e-21 Identity = 17/20 (85.00%), Postives = 20/20 (100.00%), Query Frame = -3 Query: 488 AAAVIYIITQLSDDKKPLKE 547 AAAVIYIITQLSD+KKPL++ Sbjct: 250 AAAVIYIITQLSDEKKPLRD 269
BLAST of CN184198 vs. ExPASy Swiss-Prot
Match: TF2B_ORYSJ (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 4.890e-21 Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = -1 Query: 358 KNISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 492 K+IS+ATGVAEGTIRNSYKDLYP+ S++IPN YAKEEDLKNLC+P Sbjct: 268 KDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLCTP 312 HSP 2 Score: 39.2762 bits (90), Expect = 4.890e-21 Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = -3 Query: 488 AAAVIYIITQLSDDKKPLKE 547 AAAVIY+ITQLSDDKKPLK+ Sbjct: 250 AAAVIYMITQLSDDKKPLKD 269
BLAST of CN184198 vs. ExPASy Swiss-Prot
Match: TF2B1_ARATH (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.821e-20 Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = -1 Query: 358 KNISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 492 K+IS ATGVAEGTIRNSYKDLYPH+SKI P+WYAKEEDLKNL SP Sbjct: 268 KDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312 HSP 2 Score: 35.8094 bits (81), Expect = 1.821e-20 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = -3 Query: 488 AAAVIYIITQLSDDKKPLKE 547 AA VIYIITQLSDDKK LK+ Sbjct: 250 AAVVIYIITQLSDDKKTLKD 269 The following BLAST results are available for this feature:
BLAST of CN184198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN184198 ID=CN184198; Name=CN184198; organism=Citrus sinensis; type=EST; length=549bpback to top |