CN184168

Overview
NameCN184168
Unique NameCN184168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184168 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.478e-34
Identity = 73/94 (77.66%), Postives = 77/94 (81.91%), Query Frame = -3
Query:  259 EVIKKAIEKLGLRHK*AHCRIW*RQ*NADSLANMKTADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 540
            E+IKKAIEKLGLRHK  H   +            +TADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  264 EIIKKAIEKLGLRHK-EHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356          
BLAST of CN184168 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.551e-33
Identity = 71/94 (75.53%), Postives = 77/94 (81.91%), Query Frame = -3
Query:  259 EVIKKAIEKLGLRHK*AHCRIW*RQ*NADSLANMKTADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 540
            EVIKKAIEKLGLRHK  H   + +          +TADINTF WGVANRG+S+RVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  264 EVIKKAIEKLGLRHK-EHIAAYGKGNERRLTGRHETADINTFSWGVANRGSSVRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CN184168 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.056e-33
Identity = 72/94 (76.60%), Postives = 76/94 (80.85%), Query Frame = -3
Query:  259 EVIKKAIEKLGLRHK*AHCRIW*RQ*NADSLANMKTADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 540
            E+IKKAIEKLGLRHK  H   +            +TADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE+TILWKP
Sbjct:  264 EIIKKAIEKLGLRHK-EHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356          
BLAST of CN184168 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.910e-33
Identity = 73/94 (77.66%), Postives = 75/94 (79.79%), Query Frame = -3
Query:  259 EVIKKAIEKLGLRHK*AHCRIW*RQ*NADSLANMKTADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 540
            EVIKKAIEKLGLRHK  H   +            +TADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  264 EVIKKAIEKLGLRHK-EHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CN184168 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 7.910e-33
Identity = 72/94 (76.60%), Postives = 76/94 (80.85%), Query Frame = -3
Query:  259 EVIKKAIEKLGLRHK*AHCRIW*RQ*NADSLANMKTADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 540
            EVIKKAI+KLGLRHK  H   +            +TADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  264 EVIKKAIDKLGLRHK-EHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of CN184168 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.033e-32
Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = -3
Query:  259 EVIKKAIEKLGLRHK*AHCRIW*RQ*NADSLANMKTADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 540
            E+IKKAIEKLGLRHK  H   +          + +TADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LW P
Sbjct:  264 EIIKKAIEKLGLRHK-EHISAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWNP 356          
BLAST of CN184168 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.762e-32
Identity = 70/94 (74.47%), Postives = 76/94 (80.85%), Query Frame = -3
Query:  259 EVIKKAIEKLGLRHK*AHCRIW*RQ*NADSLANMKTADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 540
            E+IKKAI+KLGLRHK  H   +          + +TADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILW P
Sbjct:  264 EIIKKAIDKLGLRHK-EHIAAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356          
BLAST of CN184168 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.006e-32
Identity = 70/94 (74.47%), Postives = 75/94 (79.79%), Query Frame = -3
Query:  259 EVIKKAIEKLGLRHK*AHCRIW*RQ*NADSLANMKTADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 540
            EVIKKAIEKL LRHK  H   +            +TAD+NTF WGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILWKP
Sbjct:  265 EVIKKAIEKLKLRHK-EHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357          
BLAST of CN184168 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 3.926e-32
Identity = 72/92 (78.26%), Postives = 74/92 (80.43%), Query Frame = -3
Query:  265 EVIKKAIEKLGLRHK*AHCRIW*RQ*NADSLANMKTADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 540
            EVIKKAIEKLGLRHK  H   +            +TADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct:  264 EVIKKAIEKLGLRHK-EHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354          
BLAST of CN184168 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.926e-32
Identity = 68/94 (72.34%), Postives = 75/94 (79.79%), Query Frame = -3
Query:  259 EVIKKAIEKLGLRHK*AHCRIW*RQ*NADSLANMKTADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 540
            E+IKKAIEKLGLRHK  H   +            +T DINTF WGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct:  264 EIIKKAIEKLGLRHK-EHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356          
The following BLAST results are available for this feature:
BLAST of CN184168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
GLNA1_ALNGL5.478e-3477.66Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA2_PHAVU3.551e-3375.53Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA2_VITVI6.056e-3376.60Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA1_VITVI7.910e-3377.66Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_LOTJA7.910e-3376.60Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLN12_ARATH1.033e-3275.53Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLN11_ARATH1.762e-3274.47Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA_PINSY3.006e-3274.47Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA_LACSA3.926e-3278.26Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA3_MEDSA3.926e-3272.34Glutamine synthetase nodule isozyme OS=Medicago sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005B18_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005B18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184168 ID=CN184168; Name=CN184168; organism=Citrus sinensis; type=EST; length=542bp
TTTTTTTTTTTGAACAAAGGAATTGACCCTTCCATAATGTTATTAAATTA
AATGTTTACATTATTCAACCCAATATGACAGCAGGAAGCAAAGAACCCAC
TGTTGCAAATACAGGGGCAGAGATTGAAACAAGACAAAAGCTGAACTACT
ACTAATAAAGCATCCTTAGCAGAACACAATTCTGTCGTGAACTCGTGAAT
CCTGAGTAAAGCCAGCAGATCAAACAAAATATTTCAAAGGTTGCTAGAGG
AGCATTCATGGCTTCCACAGAATAGTGGTTTCTGCAATCATGGAGGTGAC
AACATATGGATCCATGTTAGAAGCAGGTCTCCTGTCCTCAAAGTAACCCT
TTCCTTCTTTCTCTGTGTCTCGTCCAACACGGATTGATGCCCCACGGTTA
GCAACACCCCATTTGAAAGTGTTGATGTCAGCTGTTTTCATGTTTGCCAG
TGAGTCGGCGTTTCATTGCCTTCACCATATGCGGCAATGTGCTCACTTGT
GCCTCAATCCAAGTTTCTCAATTGCTTTCTTAATAACCTCAA
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