FC921888
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921888 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.086e-33 Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 2 Query: 2 GRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSRLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295 G +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKVS++++ IV VVW AA+CFF+ALP HS LWLI+ FN+IQV MT +KYIPQA MNF RK Sbjct: 81 GDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRK 178
BLAST of FC921888 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.173e-17 Identity = 39/94 (41.49%), Postives = 65/94 (69.15%), Query Frame = 2 Query: 17 IPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSRLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295 IPV +D+AF++H +LT IT+ Q IY+RG QK SK+ + I +++W++ V + N + LW+IN+++ +++ +T IKYIPQA +NF+ K Sbjct: 79 IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNK 172
BLAST of FC921888 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.630e-13 Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 2 Query: 20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSR-LWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295 PV +ND FS+HAV LT+I + Q +YERG Q+VS S+ + + WL V VA + L + F+ I++I+TLIKY PQA MNF K Sbjct: 200 PVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYK 292
BLAST of FC921888 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 2.780e-13 Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 2 Query: 20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSR-LWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295 PV +NDV FS+HAV+LT+I + Q +YERG Q+VS ++ + + WL A V VA + L + F+ I++ +TL+KY PQA MNF K Sbjct: 200 PVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYK 292
BLAST of FC921888 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.780e-13 Identity = 38/94 (40.43%), Postives = 60/94 (63.83%), Query Frame = 2 Query: 20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSRLWL--INFFNAIQVIMTLIKYIPQAIMNFRRK 295 PV +NDV FS+HAV LT++ + Q +YERG Q+VS ++++ + + WL + +A + WL + F+ I++ +TL+KY PQA MNF K Sbjct: 200 PVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLVLSWLFTLIALIMAAVG-ATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYK 292
BLAST of FC921888 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 1.168e-11 Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 2 Query: 20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSRL-WL--INFFNAIQVIMTLIKYIPQAIMNFRRK 295 PV NDV FS+HA+ T IT+ Q Y+R Q+VS I+ I+++ A V L S + WL + + + +++ +T+IKY+PQA+MN+RRK Sbjct: 205 PVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAI--FAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRK 297 The following BLAST results are available for this feature:
BLAST of FC921888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921888 ID=FC921888; Name=FC921888; organism=Citrus sinensis; type=EST; length=296bpback to top |