FC921888

Overview
NameFC921888
Unique NameFC921888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9549 contig Csv1_Contig9549:483..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921888 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.086e-33
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 2
Query:    2 GRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSRLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            G  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKVS++++ IV VVW  AA+CFF+ALP HS LWLI+ FN+IQV MT +KYIPQA MNF RK
Sbjct:   81 GDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRK 178          
BLAST of FC921888 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.173e-17
Identity = 39/94 (41.49%), Postives = 65/94 (69.15%), Query Frame = 2
Query:   17 IPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSRLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            IPV  +D+AF++H  +LT IT+ Q  IY+RG QK SK+ + I +++W++  V   +   N  + LW+IN+++ +++ +T IKYIPQA +NF+ K
Sbjct:   79 IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNK 172          
BLAST of FC921888 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.630e-13
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 2
Query:   20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSR-LWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            PV +ND  FS+HAV LT+I + Q  +YERG Q+VS  S+  + + WL   V   VA    +  L  +  F+ I++I+TLIKY PQA MNF  K
Sbjct:  200 PVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYK 292          
BLAST of FC921888 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.780e-13
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 2
Query:   20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSR-LWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            PV +NDV FS+HAV+LT+I + Q  +YERG Q+VS  ++  + + WL A V   VA    +  L  +  F+ I++ +TL+KY PQA MNF  K
Sbjct:  200 PVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYK 292          
BLAST of FC921888 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.780e-13
Identity = 38/94 (40.43%), Postives = 60/94 (63.83%), Query Frame = 2
Query:   20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSRLWL--INFFNAIQVIMTLIKYIPQAIMNFRRK 295
            PV +NDV FS+HAV LT++ + Q  +YERG Q+VS ++++ + + WL   +   +A    +  WL  +  F+ I++ +TL+KY PQA MNF  K
Sbjct:  200 PVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLVLSWLFTLIALIMAAVG-ATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYK 292          
BLAST of FC921888 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.168e-11
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 2
Query:   20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSRL-WL--INFFNAIQVIMTLIKYIPQAIMNFRRK 295
            PV  NDV FS+HA+  T IT+ Q   Y+R  Q+VS I+  I+++   A  V     L   S + WL  + + + +++ +T+IKY+PQA+MN+RRK
Sbjct:  205 PVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAI--FAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRK 297          
The following BLAST results are available for this feature:
BLAST of FC921888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CTNS_ARATH1.086e-3369.39Cystinosin homolog OS=Arabidopsis thaliana GN=At5g... [more]
CTNS_DICDI3.173e-1741.49Cystinosin homolog OS=Dictyostelium discoideum GN=... [more]
CTNS_MOUSE1.630e-1345.16Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1[more]
CTNS_HUMAN2.780e-1344.09Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2[more]
CTNS_BOVIN2.780e-1340.43Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1[more]
CTNS_DROME1.168e-1140.00Cystinosin homolog OS=Drosophila melanogaster GN=C... [more]
back to top
Properties
Property NameValue
Genbank descriptionC06053E10T7 RindPdigS Citrus sinensis cDNA clone C06053E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921888 ID=FC921888; Name=FC921888; organism=Citrus sinensis; type=EST; length=296bp
CGGCCGCGATCAGATGATTCCCGTGGCAGCAAATGATGTTGCGTTTTCAA
TGCATGCTGTTCTCTTGACAATAATTACCCTGTTCCAAATTGCAATCTAT
GAACGTGGTGTTCAAAAGGTATCTAAGATTTCTATGGCAATTGTCTCTGT
TGTTTGGTTGGCTGCCGCAGTTTGTTTCTTCGTAGCATTGCCAAACCATT
CTCGGCTTTGGCTCATCAACTTCTTTAACGCTATTCAAGTTATTATGACA
CTCATCAAGTATATTCCACAGGCCATCATGAACTTTAGGCGAAAGA
back to top