FC921887

Overview
NameFC921887
Unique NameFC921887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length242
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.397e-30
Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = -3
Query:    1 SLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFG 237
            +LGG +LSR+DIKKWW W YW SP+ Y QNAI+ANEF GHSW +  ++SSETLGV  LKSRGF  H YWYW+G GAL G
Sbjct:  682 ALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLG 760          
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.149e-27
Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = -3
Query:    1 SLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFG 237
            +LGGFIL+R D+KKWW W YW SPL+YAQNAI  NEFLGHSW +     + TLGV VLKSRG F    WYW+GLGAL G
Sbjct:  685 ALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLG 763          
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.959e-27
Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = -3
Query:    1 LSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DSSETLGVQVLKSRGFFAHEYWYWLGLGALFG 240
            L LGGF++SRE+IKKWW W YW SPL YAQNAI  NEFLGHSW K      S++TLGVQVLK RG F    WYW+G+GAL G
Sbjct:  680 LVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSNDTLGVQVLKVRGIFVDANWYWIGVGALLG 761          
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.166e-26
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = -3
Query:    1 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD--SSETLGVQVLKSRGFFAHEYWYWLGLGALFG 234
            LGGFIL+RE +KKWW W YW SP+ YAQNAI  NE +GHSW K      S+ETLGVQVLKSRG F    WYW+G GA+ G
Sbjct:  693 LGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIG 772          
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.166e-26
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = -3
Query:    1 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD--SSETLGVQVLKSRGFFAHEYWYWLGLGALFG 234
            LGGFIL+RE +KKWW W YW SP+ YAQNAI  NE +GHSW K      S+ETLGVQVLKSRG F    WYW+G GA+ G
Sbjct:  693 LGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIG 772          
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.826e-26
Identity = 52/80 (65.00%), Postives = 58/80 (72.50%), Query Frame = -3
Query:    1 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD--SSETLGVQVLKSRGFFAHEYWYWLGLGALFG 234
            LGGFIL RE +KKWW W YW SP+ YAQNAI  NEFLGHSW K   +  S+ETLGVQ L+SRG F    WYW+G GAL G
Sbjct:  702 LGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLG 781          
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.395e-25
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = -3
Query:    1 LSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFG 240
            L LGGFI++RE IKK+W W YW SPL YAQNAI  NEFLGHSW K    + +TLG + L++RG F  + WYW+G+GAL G
Sbjct:  684 LVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLGERFLRNRGIFVDKNWYWIGVGALIG 763          
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.086e-25
Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = -3
Query:    1 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD--SSETLGVQVLKSRGFFAHEYWYWLGLGALFG 234
            LGGFIL+R+ + KWW W YW SP+ YAQNA+  NEFLGHSW K   +  S+ETLGVQ L SRG F    WYW+G GAL G
Sbjct:  706 LGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRGIFPEAKWYWIGFGALLG 785          
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.648e-24
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = -3
Query:    1 SLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFG 237
            +LGGF+LSR+D+K WW W YW SP+ Y+ N+I+ NEF G  W       +ETLG  V+KSRGFF   YWYW+G+GAL G
Sbjct:  689 ALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTVVKSRGFFPEAYWYWIGVGALVG 767          
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.314e-23
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = -3
Query:    1 SLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFG 237
            +LGGFIL+R D+K WW W YW SPL Y+ NAI+ NEF G  WK      +E LG  V+++RGFF   YWYW+G+GAL G
Sbjct:  693 ALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGAAVVRARGFFPDAYWYWIGVGALAG 771          
The following BLAST results are available for this feature:
BLAST of FC921887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
AB40G_ARATH9.397e-3067.09ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR4_ORYSJ1.149e-2765.82Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR7_ORYSJ1.959e-2765.85Putative pleiotropic drug resistance protein 7 OS=... [more]
PDR3_ORYSJ2.166e-2663.75Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI2.166e-2663.75Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR2_ORYSJ4.826e-2665.00Probable pleiotropic drug resistance protein 2 OS=... [more]
TUR2_SPIPO2.395e-2560.00Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR1_ORYSJ4.086e-2561.25Probable pleiotropic drug resistance protein 1 OS=... [more]
PDR1_TOBAC2.648e-2455.70Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_NICPL1.314e-2355.70Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]

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Properties
Property NameValue
Genbank descriptionC06053E09T7 RindPdigS Citrus sinensis cDNA clone C06053E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921887 ID=FC921887; Name=FC921887; organism=Citrus sinensis; type=EST; length=242bp
ACCAAACAAAGCCCCCAACCCAAGCCAATACCAATATTCATGTGCGAAGA
ACCCACGGGACTTCAAAACTTGCACCCCAAGCGTTTCACTTGAGTCTTGA
GTAAACTTTTTCCAACTATGCCCCAAAAATTCATTTGCCACTATTGCATT
CTGTGCGTATGTCAAAGGAGAACACCAGTAAGCCCATTTCCACCATTTTT
TTATGTCCTCTCGCGAAAGGATAAATCCACCCAATGACAAAA
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