CX676426

Overview
NameCX676426
Unique NameCX676426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676426 vs. ExPASy Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.298e-19
Identity = 37/103 (35.92%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  406 ITKFRPIALCNVIYKIVSKMLANRLKLVLGSIISESQSAFIPGRSITDNVMISAEVMHYLKRKRQGREGAAALKIDMSKAYDRIEWNFLSSIMLKMGFSSDFV 714
            I  +RP++L +  YKIV+K ++ RLK VL  +I   QS  +PGR+I DNV +  +++H+ +R        A L +D  KA+DR++  +L   +    F   FV
Sbjct:  522 IKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARRTGL---SLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFV 621          

HSP 2 Score: 43.5134 bits (101), Expect = 6.298e-19
Identity = 32/117 (27.35%), Postives = 53/117 (45.30%), Query Frame = 2
Query:   50 NPEGINEIIANHFTQIFSTEG---GLCDEALQWVESSISAEQNLTLLENFSTAD-VREAIFSMHPDKSLGPDGMNPAFFQKFWHIIGDDVSAACLKFIQHCEFHVGLNETLLILIPK 388
            +PE I +   + +  +FS +      C+E   W    + +E+    LE   T D + +A+  M  +KS G DG+   FFQ FW  +G D      +  +  E  +     +L L+PK
Sbjct:  401 DPEAIRDRARSFYQNLFSPDPISPDACEEL--WDGLPVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPK 515          
BLAST of CX676426 vs. ExPASy Swiss-Prot
Match: POL2_MOUSE (Retrovirus-related Pol polyprotein LINE-1 OS=Mus musculus GN=Pol PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.065e-18
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  397 PNHITKFRPIALCNVIYKIVSKMLANRLKLVLGSIISESQSAFIPGRSITDNVMISAEVMHYLKRKRQGREGAAALKIDMSKAYDRIEWNFLSSIMLKMGFSSDFVKLI 723
            P  I  FRPI+L N+  KI++K+LANR++  + +II   Q  FIPG     N+  S  V+HY+ + +   +    + +D  KA+D+I+  F+  ++ + G    ++ +I
Sbjct:  531 PTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKD--KNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMI 637          

HSP 2 Score: 45.8246 bits (107), Expect = 1.065e-18
Identity = 28/95 (29.47%), Postives = 49/95 (51.58%), Query Frame = 2
Query:   11 IGKLRNSQGQWCTNPEGINEIIANHFTQIFSTEGGLCDEALQWVE----SSISAEQNLTLLENFSTADVREAIFSMHPDKSLGPDGMNPAFFQKF 283
            I K+RN +G   T+PE I   I + + +++ST+    DE  ++++      ++ +Q   L    S  ++   I S+   KS GPDG +  F+Q F
Sbjct:  397 INKIRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTF 491          
BLAST of CX676426 vs. ExPASy Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 7.502e-16
Identity = 38/117 (32.48%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  397 PNHITKFRPIALCNVIYKIVSKMLANRLKLVLGSIISESQSAFIPGRSITDNVMISAEVMHYLKRKRQGREGAAALKIDMSKAYDRIEWNFLSSIMLKMGFSSDFVKLIMLCVSTVT 747
            P     +RPI+L N+  KI++K+L NR++  +  II   Q  FIPG     N+  S  V+ ++ + +   +    L ID  KA+D I+  F+   + K+G    F+KLI    S  T
Sbjct:  523 PTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLK--NKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPT 637          

HSP 2 Score: 40.817 bits (94), Expect = 7.502e-16
Identity = 24/98 (24.49%), Postives = 50/98 (51.02%), Query Frame = 2
Query:    2 QNAIGKLRNSQGQWCTNPEGINEIIANHFTQIFSTEGGLCDEALQWVESS----ISAEQNLTLLENFSTADVREAIFSMHPDKSLGPDGMNPAFFQKF 283
            ++ I  +RN   +  T+P  I +I+  ++ +++S +     E  Q++E+     +S ++   L    S++++   I ++   KS GPDG    F+Q F
Sbjct:  386 KSLISSIRNGNDEITTDPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTF 483          
The following BLAST results are available for this feature:
BLAST of CX676426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YTX2_XENLA6.298e-1935.92Transposon TX1 uncharacterized 149 kDa protein OS=... [more]
POL2_MOUSE1.065e-1832.11Retrovirus-related Pol polyprotein LINE-1 OS=Mus m... [more]
LIN1_NYCCO7.502e-1632.48LINE-1 reverse transcriptase homolog OS=Nycticebus... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_69F03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69F03-K5-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676426 ID=CX676426; Name=CX676426; organism=Citrus sinensis; type=EST; length=749bp
GCAAAATGCAATTGGAAAGCTTCGAAATAGCCAGGGACAGTGGTGCACGA
ATCCGGAAGGCATCAACGAGATAATCGCAAATCACTTCACTCAGATTTTC
TCTACTGAAGGTGGCTTATGTGATGAGGCCCTCCAGTGGGTGGAGTCTTC
GATTTCAGCTGAGCAGAACCTCACTCTCCTGGAGAACTTCAGTACAGCTG
ATGTTCGAGAAGCCATTTTCAGCATGCATCCAGATAAGTCTCTTGGTCCC
GATGGTATGAACCCCGCCTTTTTTCAAAAATTTTGGCATATTATTGGTGA
TGATGTATCTGCTGCGTGCTTGAAATTTATTCAACATTGTGAATTTCATG
TTGGCTTGAATGAGACCCTCCTGATCTTGATTCCCAAAACCCCTAACCGA
ATCATATTACTAAGTTTCGGCCTATAGCTTTATGTAATGTTATCTACAAA
ATTGTTTCTAAAATGTTAGCTAATCGGCTTAAGTTGGTCTTGGGGTCTAT
TATTTCGGAGTCTCAAAGTGCTTTCATTCCGGGTAGATCTATCACTGATA
ATGTTATGATTTCGGCTGAGGTTATGCATTACTTAAAAAGGAAAAGACAG
GGTAGGGAAGGGGCTGCAGCTCTTAAAATTGACATGTCAAAAGCTTATGA
TAGAATTGAGTGGAATTTTTTGTCTTCTATTATGCTCAAGATGGGTTTCA
GTTCTGATTTTGTAAAACTGATTATGTTATGTGTGTCCACCGTCACTTA
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