CX676426
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676426 vs. ExPASy Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.298e-19 Identity = 37/103 (35.92%), Postives = 59/103 (57.28%), Query Frame = 1 Query: 406 ITKFRPIALCNVIYKIVSKMLANRLKLVLGSIISESQSAFIPGRSITDNVMISAEVMHYLKRKRQGREGAAALKIDMSKAYDRIEWNFLSSIMLKMGFSSDFV 714 I +RP++L + YKIV+K ++ RLK VL +I QS +PGR+I DNV + +++H+ +R A L +D KA+DR++ +L + F FV Sbjct: 522 IKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARRTGL---SLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFV 621 HSP 2 Score: 43.5134 bits (101), Expect = 6.298e-19 Identity = 32/117 (27.35%), Postives = 53/117 (45.30%), Query Frame = 2 Query: 50 NPEGINEIIANHFTQIFSTEG---GLCDEALQWVESSISAEQNLTLLENFSTAD-VREAIFSMHPDKSLGPDGMNPAFFQKFWHIIGDDVSAACLKFIQHCEFHVGLNETLLILIPK 388 +PE I + + + +FS + C+E W + +E+ LE T D + +A+ M +KS G DG+ FFQ FW +G D + + E + +L L+PK Sbjct: 401 DPEAIRDRARSFYQNLFSPDPISPDACEEL--WDGLPVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPK 515
BLAST of CX676426 vs. ExPASy Swiss-Prot
Match: POL2_MOUSE (Retrovirus-related Pol polyprotein LINE-1 OS=Mus musculus GN=Pol PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 1.065e-18 Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 1 Query: 397 PNHITKFRPIALCNVIYKIVSKMLANRLKLVLGSIISESQSAFIPGRSITDNVMISAEVMHYLKRKRQGREGAAALKIDMSKAYDRIEWNFLSSIMLKMGFSSDFVKLI 723 P I FRPI+L N+ KI++K+LANR++ + +II Q FIPG N+ S V+HY+ + + + + +D KA+D+I+ F+ ++ + G ++ +I Sbjct: 531 PTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKD--KNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMI 637 HSP 2 Score: 45.8246 bits (107), Expect = 1.065e-18 Identity = 28/95 (29.47%), Postives = 49/95 (51.58%), Query Frame = 2 Query: 11 IGKLRNSQGQWCTNPEGINEIIANHFTQIFSTEGGLCDEALQWVE----SSISAEQNLTLLENFSTADVREAIFSMHPDKSLGPDGMNPAFFQKF 283 I K+RN +G T+PE I I + + +++ST+ DE ++++ ++ +Q L S ++ I S+ KS GPDG + F+Q F Sbjct: 397 INKIRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTF 491
BLAST of CX676426 vs. ExPASy Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=1 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 7.502e-16 Identity = 38/117 (32.48%), Postives = 60/117 (51.28%), Query Frame = 1 Query: 397 PNHITKFRPIALCNVIYKIVSKMLANRLKLVLGSIISESQSAFIPGRSITDNVMISAEVMHYLKRKRQGREGAAALKIDMSKAYDRIEWNFLSSIMLKMGFSSDFVKLIMLCVSTVT 747 P +RPI+L N+ KI++K+L NR++ + II Q FIPG N+ S V+ ++ + + + L ID KA+D I+ F+ + K+G F+KLI S T Sbjct: 523 PTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLK--NKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPT 637 HSP 2 Score: 40.817 bits (94), Expect = 7.502e-16 Identity = 24/98 (24.49%), Postives = 50/98 (51.02%), Query Frame = 2 Query: 2 QNAIGKLRNSQGQWCTNPEGINEIIANHFTQIFSTEGGLCDEALQWVESS----ISAEQNLTLLENFSTADVREAIFSMHPDKSLGPDGMNPAFFQKF 283 ++ I +RN + T+P I +I+ ++ +++S + E Q++E+ +S ++ L S++++ I ++ KS GPDG F+Q F Sbjct: 386 KSLISSIRNGNDEITTDPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTF 483 The following BLAST results are available for this feature:
BLAST of CX676426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX676426 ID=CX676426; Name=CX676426; organism=Citrus sinensis; type=EST; length=749bpback to top |