CX676410

Overview
NameCX676410
Unique NameCX676410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN3_ARATH (Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 2.845e-95
Identity = 184/216 (85.19%), Postives = 191/216 (88.43%), Query Frame = 3
Query:    3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNPEFSSTLT 650
            GIPLLIAMYGEYSGSLMVQ+VVLQCIIWYTLLLFLFE+RGAKMLIMEQFPETAASIVSFKV+SDVVSLDG DFLETDAEIGDDGKLHVTVRKSNASRRS   C  P +TPRPSNLTGAEIYSLS+    TPRGSNFNHSDFY+MM   GFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEEN   A SSPRFG+YP      SYPAPNPEFSST T
Sbjct:  117 GIPLLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFRGAKMLIMEQFPETAASIVSFKVESDVVSLDGHDFLETDAEIGDDGKLHVTVRKSNASRRSF--CG-PNMTPRPSNLTGAEIYSLST----TPRGSNFNHSDFYNMM---GFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENCAMA-SSPRFGYYPGGGA-GSYPAPNPEFSSTTT 320          
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN7_ARATH (Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2)

HSP 1 Score: 341.658 bits (875), Expect = 2.039e-93
Identity = 178/213 (83.57%), Postives = 186/213 (87.32%), Query Frame = 3
Query:    3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNPEFSS 641
            GIPLLIAMYGEYSGSLMVQ+VVLQCIIWYTLLLFLFEYRGAK+LIMEQFPET ASIVSFKV+SDVVSLDG DFLETDA+IGDDGKLHVTVRKSNASRRS        +TPRPSNLTGAEIYSL    N TPRGSNFNHSDFYSMM   GFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEE+   A SSPRFG+YP    P SYPAPNPEFS+
Sbjct:  117 GIPLLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEYRGAKILIMEQFPETGASIVSFKVESDVVSLDGHDFLETDAQIGDDGKLHVTVRKSNASRRSFYGGGGTNMTPRPSNLTGAEIYSL----NTTPRGSNFNHSDFYSMM---GFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEESCAMA-SSPRFGYYPG-GAPGSYPAPNPEFST 320          
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN4_ARATH (Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 5.746e-88
Identity = 173/217 (79.72%), Postives = 186/217 (85.71%), Query Frame = 3
Query:    3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFY--PAQTVPT--SYPAPNPEFSS 641
            GIPLLIAMYG Y+GSLMVQVVVLQCIIWYTLLLFLFEYRGAK+LIMEQFPET ASIVSFKV+SDVVSLDG DFLETDAEIG+DGKLHVTVRKSNASRRSL       +TPRPSNLTGAEIYSLSS    TPRGSNFNHSDFYS+M   GFPGGRLSNFGPAD+YSVQSSRGPTPRPSNFEEN     ++ ++GFY     +VP   SYPAPNPEFS+
Sbjct:  117 GIPLLIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETGASIVSFKVESDVVSLDGHDFLETDAEIGNDGKLHVTVRKSNASRRSL------MMTPRPSNLTGAEIYSLSS----TPRGSNFNHSDFYSVM---GFPGGRLSNFGPADLYSVQSSRGPTPRPSNFEEN-----NAVKYGFYNNTNSSVPAAGSYPAPNPEFST 315          
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PINI_ARATH (Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.127e-67
Identity = 142/229 (62.01%), Postives = 164/229 (71.62%), Query Frame = 3
Query:    3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPAL--TPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEEN--------SGQALSSPRFGFYPAQT---VPTSYPAPNPEFSSTLT 650
            GIPLL  MYG +SG LMVQ+VVLQCIIWYTL+LFLFEYRGAK+LI EQFP+TA SIVS  VDSD++SLDGR  LET+AEI +DGKLHVTVR+SNASR  +       L  TPRPSNLT AEIYSL SSRNPTPRGS+FNH+DFYSMM      GGR SNFGP +  +V  S+GPTPRPSN+EE+        +G A  + RF +    +       YPAPNP   S  T
Sbjct:  117 GIPLLKGMYGNFSGDLMVQIVVLQCIIWYTLMLFLFEYRGAKLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETEAEIKEDGKLHVTVRRSNASRSDIYSRRSQGLSATPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMM---ASGGGRNSNFGPGE--AVFGSKGPTPRPSNYEEDGGPAKPTAAGTAAGAGRFHYQSGGSGGGGGAHYPAPNPGMFSPNT 340          
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN1_ORYSJ (Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.775e-66
Identity = 136/222 (61.26%), Postives = 166/222 (74.77%), Query Frame = 3
Query:    3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDG-RDFLETDAEIGDDGKLHVTVRKSNA------SRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTS--YPAPNPEFSS 641
            GIPLL  MYGE+SGSLMVQ+VVLQCIIWYTL+LF+FEYRGA+MLI EQFP+TAA+I S  VD DVVSLDG RD +ET+ E+ +DG++HVTVR+SNA      SRRS+G     + TPRPSNLT AEIYSL SSRNPTPRGS+FNH+DFYSM+       GR SNFG AD + V++  G TPRPSN+E+++    S P++    +   P +  YPAPNP  SS
Sbjct:  117 GIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARMLITEQFPDTAANIASIVVDPDVVSLDGRRDAIETETEVKEDGRIHVTVRRSNASRSDIYSRRSMG---FSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMV-------GRSSNFGAADAFGVRT--GATPRPSNYEDDA----SKPKYPLPASNAAPMAGHYPAPNPAVSS 322          
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN3A_ORYSJ (Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.073e-66
Identity = 131/194 (67.53%), Postives = 156/194 (80.41%), Query Frame = 3
Query:    3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFP----GGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSP 572
            GIPLLIAMYG YSGSLMVQ+VVLQCIIWYTL+LFLFE+R A+MLI +QFP+TAASIVS  VD DVVSL+G    ET+AE+  DG+LHVTVR+S+ SRRSL       +TPRPSNLTGAEIYSLSSSRNPTPRGSNFNH+DF++M+G    P      R S+FG +++YS+QSSRGPTPR SNF+E+S +    P
Sbjct:  120 GIPLLIAMYGPYSGSLMVQIVVLQCIIWYTLMLFLFEFRAARMLIADQFPDTAASIVSLHVDPDVVSLEG-GHAETEAEVAADGRLHVTVRRSSVSRRSL------LVTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHADFFAMVGGGPPPPTPAAVRGSSFGASELYSLQSSRGPTPRQSNFDEHSARPPKPP 306          
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN1C_ORYSJ (Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.683e-63
Identity = 131/218 (60.09%), Postives = 161/218 (73.85%), Query Frame = 3
Query:    3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDG-RDFLETDAEIGDDGKLHVTVRKSNA------SRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQA-LSSPRFGFYPAQTVPTSYPAPNPE 632
            GIPLL  MYGE+SGSLMVQ+VVLQCIIWYTL+LF+FEYRGA++LI EQFP+TA +I S  VD+DVVSLDG RD +ET+AE+ +DGK+HVTVR+SNA      SRRS+G     + TPRPSNLT AEIYSL SSRNPTPRGS+FNH+DFYSM+       GR SNF   D + V++  G TPRPSN+EE++     +  ++G YPA   P     P P+
Sbjct:  117 GIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARILITEQFPDTAGAIASIVVDADVVSLDGRRDMIETEAEVKEDGKIHVTVRRSNASRSDVYSRRSMG---FSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMV-------GRSSNFAAGDAFGVRT--GATPRPSNYEEDAAAPNKAGSKYGQYPAPN-PAMAAPPKPK 321          
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN2_ARATH (Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.146e-62
Identity = 131/238 (55.04%), Postives = 165/238 (69.33%), Query Frame = 3
Query:    3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSL--------GPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPG---GRLSNFGPA------DMYSVQSSRGPTPRPSNFEE-------NSGQALSSPRFGFYPAQTVPTSYPAPNPEFSST 644
            GIPLL AMYG++SG+LMVQ+VVLQ IIWYTL+LFLFE+RGAK+LI EQFPETA SI SF+VDSDV+SL+GR+ L+TDAEIGDDGKLHV VR+S+A+   +        G  +   +TPR SNLTG EIYS+ SSR PTPR S+FN +DFY+M      P    G  +++G A      D+YS+QSS+G TPR SNF+E        +G+   S     Y   +VP SYP PNP F+ +
Sbjct:  117 GIPLLRAMYGDFSGNLMVQIVVLQSIIWYTLMLFLFEFRGAKLLISEQFPETAGSITSFRVDSDVISLNGREPLQTDAEIGDDGKLHVVVRRSSAASSMISSFNKSHGGGLNSSMITPRASNLTGVEIYSVQSSREPTPRASSFNQTDFYAMFNASKAPSPRHGYTNSYGGAGAGPGGDVYSLQSSKGVTPRTSNFDEEVMKTAKKAGRGGRSMSGELYNNNSVP-SYPPPNPMFTGS 353          
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN2_ORYSJ (Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.530e-48
Identity = 111/222 (50.00%), Postives = 143/222 (64.41%), Query Frame = 3
Query:    3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQF-PETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKS----------NASRRSLGPC--SLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNP 629
            GIPLL AMYG++SGSLMVQ+VVLQ +IWYTL+LFLFEYRGAK LI EQF P+  ASI SF+VDSDVVSL+GR+ L+ DAE+G DG++HV +R+S           A+R  +     +  A+TPR SNLTG EIYSL +SR PTPR S+FN +DFY+M     F G ++++   + M     + G   R    +E      +S +         P SYPAPNP
Sbjct:  125 GIPLLRAMYGDFSGSLMVQIVVLQSVIWYTLMLFLFEYRGAKALISEQFPPDVGASIASFRVDSDVVSLNGREALQADAEVGRDGRVHVVIRRSASASTTGGGGGAARSGVSRAYGASNAMTPRASNLTGVEIYSLQTSREPTPRASSFNQADFYAM-----FSGSKMASQMASPMAQHGGAGG---RAQGLDEQVTNKFASGK------AADPPSYPAPNP 332          
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN1B_ORYSJ (Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.885e-47
Identity = 101/160 (63.12%), Postives = 124/160 (77.50%), Query Frame = 3
Query:    3 GIPLLIAMYGEY----SGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSL----DGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCS------LPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMG 440
            GIPLL  MY       SGSLMVQ+VVLQCIIWYTL+LFLFEYRGA++L+MEQFP+TAASIVSF+VDSDVVSL     G   L+ +AE+GDDG++ VTVRKS +S RS   CS        ++ PR SNL+G EIYSL SSRNPTPRGS+FNH++F++++G
Sbjct:  117 GIPLLKGMYAAAADVDSGSLMVQIVVLQCIIWYTLMLFLFEYRGARLLVMEQFPDTAASIVSFRVDSDVVSLAGGGGGAAELQAEAEVGDDGRMRVTVRKSTSS-RSEAACSHGTQSHSQSMQPRVSNLSGVEIYSLQSSRNPTPRGSSFNHAEFFNIVG 275          
The following BLAST results are available for this feature:
BLAST of CX676410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PIN3_ARATH2.845e-9585.19Auxin efflux carrier component 3 OS=Arabidopsis th... [more]
PIN7_ARATH2.039e-9383.57Auxin efflux carrier component 7 OS=Arabidopsis th... [more]
PIN4_ARATH5.746e-8879.72Auxin efflux carrier component 4 OS=Arabidopsis th... [more]
PINI_ARATH1.127e-6762.01Auxin efflux carrier component 1 OS=Arabidopsis th... [more]
PIN1_ORYSJ2.775e-6661.26Auxin efflux carrier component 1 OS=Oryza sativa s... [more]
PIN3A_ORYSJ8.073e-6667.53Probable auxin efflux carrier component 3a OS=Oryz... [more]
PIN1C_ORYSJ1.683e-6360.09Probable auxin efflux carrier component 1c OS=Oryz... [more]
PIN2_ARATH4.146e-6255.04Auxin efflux carrier component 2 OS=Arabidopsis th... [more]
PIN2_ORYSJ1.530e-4850.00Probable auxin efflux carrier component 2 OS=Oryza... [more]
PIN1B_ORYSJ2.885e-4763.13Probable auxin efflux carrier component 1b OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69E03-I5-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676410 ID=CX676410; Name=CX676410; organism=Citrus sinensis; type=EST; length=654bp
TGGGAATCCCTCTGCTCATCGCCATGTACGGCGAATACTCAGGCAGTCTC
ATGGTACAAGTCGTCGTGTTACAGTGCATTATCTGGTACACTCTCTTGCT
CTTCCTCTTCGAGTACCGCGGCGCCAAGATGCTGATCATGGAGCAGTTCC
CGGAGACTGCTGCTTCAATCGTTTCTTTCAAAGTTGATTCGGATGTGGTG
TCACTTGACGGCCGGGATTTCCTGGAAACCGATGCCGAAATTGGAGATGA
TGGGAAGCTTCACGTGACCGTCAGGAAATCAAATGCTTCTAGAAGGTCAT
TAGGCCCGTGCTCTCTGCCGGCATTAACCCCCCGTCCGTCGAACCTCACC
GGAGCTGAAATTTACAGCTTGAGCTCGTCGAGGAATCCGACGCCTAGGGG
TTCCAATTTTAATCATTCAGATTTTTATTCTATGATGGGTGTCCAAGGTT
TCCCGGGAGGAAGATTGTCAAATTTCGGGCCAGCTGATATGTACTCGGTA
CAATCTTCCAGAGGACCGACACCAAGACCCTCCAATTTTGAAGAAAATAG
CGGACAAGCACTGTCTTCTCCCAGATTCGGGTTTTATCCGGCTCAGACAG
TCCCAACATCGTACCCTGCACCGAATCCCGAGTTTTCGTCTACTCTCACG
AAAA
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