CX676410
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN3_ARATH (Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1) HSP 1 Score: 347.821 bits (891), Expect = 2.845e-95 Identity = 184/216 (85.19%), Postives = 191/216 (88.43%), Query Frame = 3 Query: 3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNPEFSSTLT 650 GIPLLIAMYGEYSGSLMVQ+VVLQCIIWYTLLLFLFE+RGAKMLIMEQFPETAASIVSFKV+SDVVSLDG DFLETDAEIGDDGKLHVTVRKSNASRRS C P +TPRPSNLTGAEIYSLS+ TPRGSNFNHSDFY+MM GFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEEN A SSPRFG+YP SYPAPNPEFSST T Sbjct: 117 GIPLLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFRGAKMLIMEQFPETAASIVSFKVESDVVSLDGHDFLETDAEIGDDGKLHVTVRKSNASRRSF--CG-PNMTPRPSNLTGAEIYSLST----TPRGSNFNHSDFYNMM---GFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENCAMA-SSPRFGYYPGGGA-GSYPAPNPEFSSTTT 320
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN7_ARATH (Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2) HSP 1 Score: 341.658 bits (875), Expect = 2.039e-93 Identity = 178/213 (83.57%), Postives = 186/213 (87.32%), Query Frame = 3 Query: 3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNPEFSS 641 GIPLLIAMYGEYSGSLMVQ+VVLQCIIWYTLLLFLFEYRGAK+LIMEQFPET ASIVSFKV+SDVVSLDG DFLETDA+IGDDGKLHVTVRKSNASRRS +TPRPSNLTGAEIYSL N TPRGSNFNHSDFYSMM GFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEE+ A SSPRFG+YP P SYPAPNPEFS+ Sbjct: 117 GIPLLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEYRGAKILIMEQFPETGASIVSFKVESDVVSLDGHDFLETDAQIGDDGKLHVTVRKSNASRRSFYGGGGTNMTPRPSNLTGAEIYSL----NTTPRGSNFNHSDFYSMM---GFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEESCAMA-SSPRFGYYPG-GAPGSYPAPNPEFST 320
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN4_ARATH (Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1) HSP 1 Score: 323.553 bits (828), Expect = 5.746e-88 Identity = 173/217 (79.72%), Postives = 186/217 (85.71%), Query Frame = 3 Query: 3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFY--PAQTVPT--SYPAPNPEFSS 641 GIPLLIAMYG Y+GSLMVQVVVLQCIIWYTLLLFLFEYRGAK+LIMEQFPET ASIVSFKV+SDVVSLDG DFLETDAEIG+DGKLHVTVRKSNASRRSL +TPRPSNLTGAEIYSLSS TPRGSNFNHSDFYS+M GFPGGRLSNFGPAD+YSVQSSRGPTPRPSNFEEN ++ ++GFY +VP SYPAPNPEFS+ Sbjct: 117 GIPLLIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETGASIVSFKVESDVVSLDGHDFLETDAEIGNDGKLHVTVRKSNASRRSL------MMTPRPSNLTGAEIYSLSS----TPRGSNFNHSDFYSVM---GFPGGRLSNFGPADLYSVQSSRGPTPRPSNFEEN-----NAVKYGFYNNTNSSVPAAGSYPAPNPEFST 315
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PINI_ARATH (Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 1.127e-67 Identity = 142/229 (62.01%), Postives = 164/229 (71.62%), Query Frame = 3 Query: 3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPAL--TPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEEN--------SGQALSSPRFGFYPAQT---VPTSYPAPNPEFSSTLT 650 GIPLL MYG +SG LMVQ+VVLQCIIWYTL+LFLFEYRGAK+LI EQFP+TA SIVS VDSD++SLDGR LET+AEI +DGKLHVTVR+SNASR + L TPRPSNLT AEIYSL SSRNPTPRGS+FNH+DFYSMM GGR SNFGP + +V S+GPTPRPSN+EE+ +G A + RF + + YPAPNP S T Sbjct: 117 GIPLLKGMYGNFSGDLMVQIVVLQCIIWYTLMLFLFEYRGAKLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETEAEIKEDGKLHVTVRRSNASRSDIYSRRSQGLSATPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMM---ASGGGRNSNFGPGE--AVFGSKGPTPRPSNYEEDGGPAKPTAAGTAAGAGRFHYQSGGSGGGGGAHYPAPNPGMFSPNT 340
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN1_ORYSJ (Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1) HSP 1 Score: 251.521 bits (641), Expect = 2.775e-66 Identity = 136/222 (61.26%), Postives = 166/222 (74.77%), Query Frame = 3 Query: 3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDG-RDFLETDAEIGDDGKLHVTVRKSNA------SRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTS--YPAPNPEFSS 641 GIPLL MYGE+SGSLMVQ+VVLQCIIWYTL+LF+FEYRGA+MLI EQFP+TAA+I S VD DVVSLDG RD +ET+ E+ +DG++HVTVR+SNA SRRS+G + TPRPSNLT AEIYSL SSRNPTPRGS+FNH+DFYSM+ GR SNFG AD + V++ G TPRPSN+E+++ S P++ + P + YPAPNP SS Sbjct: 117 GIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARMLITEQFPDTAANIASIVVDPDVVSLDGRRDAIETETEVKEDGRIHVTVRRSNASRSDIYSRRSMG---FSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMV-------GRSSNFGAADAFGVRT--GATPRPSNYEDDA----SKPKYPLPASNAAPMAGHYPAPNPAVSS 322
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN3A_ORYSJ (Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 8.073e-66 Identity = 131/194 (67.53%), Postives = 156/194 (80.41%), Query Frame = 3 Query: 3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFP----GGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSP 572 GIPLLIAMYG YSGSLMVQ+VVLQCIIWYTL+LFLFE+R A+MLI +QFP+TAASIVS VD DVVSL+G ET+AE+ DG+LHVTVR+S+ SRRSL +TPRPSNLTGAEIYSLSSSRNPTPRGSNFNH+DF++M+G P R S+FG +++YS+QSSRGPTPR SNF+E+S + P Sbjct: 120 GIPLLIAMYGPYSGSLMVQIVVLQCIIWYTLMLFLFEFRAARMLIADQFPDTAASIVSLHVDPDVVSLEG-GHAETEAEVAADGRLHVTVRRSSVSRRSL------LVTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHADFFAMVGGGPPPPTPAAVRGSSFGASELYSLQSSRGPTPRQSNFDEHSARPPKPP 306
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN1C_ORYSJ (Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.683e-63 Identity = 131/218 (60.09%), Postives = 161/218 (73.85%), Query Frame = 3 Query: 3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDG-RDFLETDAEIGDDGKLHVTVRKSNA------SRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQA-LSSPRFGFYPAQTVPTSYPAPNPE 632 GIPLL MYGE+SGSLMVQ+VVLQCIIWYTL+LF+FEYRGA++LI EQFP+TA +I S VD+DVVSLDG RD +ET+AE+ +DGK+HVTVR+SNA SRRS+G + TPRPSNLT AEIYSL SSRNPTPRGS+FNH+DFYSM+ GR SNF D + V++ G TPRPSN+EE++ + ++G YPA P P P+ Sbjct: 117 GIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARILITEQFPDTAGAIASIVVDADVVSLDGRRDMIETEAEVKEDGKIHVTVRRSNASRSDVYSRRSMG---FSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMV-------GRSSNFAAGDAFGVRT--GATPRPSNYEEDAAAPNKAGSKYGQYPAPN-PAMAAPPKPK 321
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN2_ARATH (Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2) HSP 1 Score: 237.654 bits (605), Expect = 4.146e-62 Identity = 131/238 (55.04%), Postives = 165/238 (69.33%), Query Frame = 3 Query: 3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSL--------GPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPG---GRLSNFGPA------DMYSVQSSRGPTPRPSNFEE-------NSGQALSSPRFGFYPAQTVPTSYPAPNPEFSST 644 GIPLL AMYG++SG+LMVQ+VVLQ IIWYTL+LFLFE+RGAK+LI EQFPETA SI SF+VDSDV+SL+GR+ L+TDAEIGDDGKLHV VR+S+A+ + G + +TPR SNLTG EIYS+ SSR PTPR S+FN +DFY+M P G +++G A D+YS+QSS+G TPR SNF+E +G+ S Y +VP SYP PNP F+ + Sbjct: 117 GIPLLRAMYGDFSGNLMVQIVVLQSIIWYTLMLFLFEFRGAKLLISEQFPETAGSITSFRVDSDVISLNGREPLQTDAEIGDDGKLHVVVRRSSAASSMISSFNKSHGGGLNSSMITPRASNLTGVEIYSVQSSREPTPRASSFNQTDFYAMFNASKAPSPRHGYTNSYGGAGAGPGGDVYSLQSSKGVTPRTSNFDEEVMKTAKKAGRGGRSMSGELYNNNSVP-SYPPPNPMFTGS 353
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN2_ORYSJ (Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 1.530e-48 Identity = 111/222 (50.00%), Postives = 143/222 (64.41%), Query Frame = 3 Query: 3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQF-PETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKS----------NASRRSLGPC--SLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNP 629 GIPLL AMYG++SGSLMVQ+VVLQ +IWYTL+LFLFEYRGAK LI EQF P+ ASI SF+VDSDVVSL+GR+ L+ DAE+G DG++HV +R+S A+R + + A+TPR SNLTG EIYSL +SR PTPR S+FN +DFY+M F G ++++ + M + G R +E +S + P SYPAPNP Sbjct: 125 GIPLLRAMYGDFSGSLMVQIVVLQSVIWYTLMLFLFEYRGAKALISEQFPPDVGASIASFRVDSDVVSLNGREALQADAEVGRDGRVHVVIRRSASASTTGGGGGAARSGVSRAYGASNAMTPRASNLTGVEIYSLQTSREPTPRASSFNQADFYAM-----FSGSKMASQMASPMAQHGGAGG---RAQGLDEQVTNKFASGK------AADPPSYPAPNP 332
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN1B_ORYSJ (Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 2.885e-47 Identity = 101/160 (63.12%), Postives = 124/160 (77.50%), Query Frame = 3 Query: 3 GIPLLIAMYGEY----SGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSL----DGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCS------LPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMG 440 GIPLL MY SGSLMVQ+VVLQCIIWYTL+LFLFEYRGA++L+MEQFP+TAASIVSF+VDSDVVSL G L+ +AE+GDDG++ VTVRKS +S RS CS ++ PR SNL+G EIYSL SSRNPTPRGS+FNH++F++++G Sbjct: 117 GIPLLKGMYAAAADVDSGSLMVQIVVLQCIIWYTLMLFLFEYRGARLLVMEQFPDTAASIVSFRVDSDVVSLAGGGGGAAELQAEAEVGDDGRMRVTVRKSTSS-RSEAACSHGTQSHSQSMQPRVSNLSGVEIYSLQSSRNPTPRGSSFNHAEFFNIVG 275 The following BLAST results are available for this feature:
BLAST of CX676410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX676410 ID=CX676410; Name=CX676410; organism=Citrus sinensis; type=EST; length=654bpback to top |