CX676407

Overview
NameCX676407
Unique NameCX676407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX676407 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22
Identity = 84/237 (35.44%), Postives = 126/237 (53.16%), Query Frame = -2 
Query:  112 TSNDEKSCANLQSTNAS-TAEPINSSKATESKVQ--TRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAA-------ASVNSNGGSQSFPINVHQPG-SNGIHVPIQSW-GVVGHQVPGMMMPI---ADQQKYVQ------MRNSQLLYPAGNFVNLPTSSMYTQRPMAPINGAMNIGATRRPPASAVSSVTRT--QLGNGKDHDFSSLTRGMFTK 753
            T  D+ S A  QS  +  TAE I ++K  ES     +    EDLF  +P++    ++++ KDVK D+M+LF K+ +VSPF++ QQQ  + A       A+  + GG+   P  V+Q   +N ++V   +W    G+Q+PGM  P+   AD QK +Q        N++   P  N +  P+SS YT      +NG M   +T +P +S+ +  T T     +GKD DFSSL  GMFTK
Sbjct:  253 TPADDNSWAGFQSAGSGQTAEKIVTAKPAESSSPPASSSDFEDLFKDTPNL---TTQQAPKDVKGDIMSLFEKTNIVSPFAMHQQQVAMLAQQQALYMAAAKAAGGT---PNGVNQQAIANALNVASANWSNPGGYQIPGMTNPVGGQADLQKLMQNMNMNANMNTRPAQPQENTLQYPSSSFYTMGQANQVNG-MTPNSTGKPQSSSATQPTSTTPSSQSGKDFDFSSLMDGMFTK 482
The following BLAST results are available for this feature:
BLAST of CX676407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AGD5_ARATH3.298e-2235.44Probable ADP-ribosylation factor GTPase-activating... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_69D12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69D12-G23-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676407 ID=CX676407; Name=CX676407; organism=Citrus sinensis; type=EST; length=769bp
TTTTTTTTTTTTTTTAACAAAGAATGCACTTATTTATTTATTTATTAAAA
AAAAAAACCTATTTCTGTCATACTAAAGAAAAACAAAGCATTCTCTGACA
ATCAGTTACTGTTTTGTAAACATCCCTCGAGTTAGAGATGAAAAATCATG
ATCTTTTCCATTTCCTAGTTGAGTACGAGTGACTGAGGAAACTGCAGATG
CTGGAGGACGCCTCGTAGCTCCAATATTCATTGCACCGTTAATTGGAGCC
ATTGGCCGTTGTGTATACATGCTGGATGTCGGAAGATTAACAAAATTCCC
AGCCGGATACAAAAGTTGGCTATTTCTCATCTGCACATATTTCTGTTGAT
CAGCAATGGGCATCATCATTCCAGGAACTTGATGGCCAACAACTCCCCAG
CTCTGAATGGGTACGTGAATGCCATTAGAACCAGGTTGATGTACATTGAT
CGGAAAGGATTGAGACCCACCATTAGAATTTACAGAAGCAGCTGCAAGGA
AAGACTGTTGTTGATCGATAGAAAATGGAGACACCATTTCAGACTTTCCG
AAGAGGTTCATAACATCATTCTTTACATCTTTCTGGGATTTCTCTGAAAC
AGATGGTATGACTGATGGTGAACCCATAAATAGATCCTCAATTCTGTATC
TCGTTTGTACCTTGCTTTCAGTTGCCTTTGACGAATTAATTGGCTCAGCA
GTTGAAGCATTGGTAGATTGTAAATTGGCACATGATTTCTCATCATTAGA
AGTCTTGGAATCATTTTCT
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