EY666313

Overview
NameEY666313
Unique NameEY666313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY666313_ssr90 microsatellite EY666313_ssr90:90..101. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13007 contig Csv1_Contig13007:126..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY666313 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 2 
Query:  299 CHSDGLSPKELKSLSQFKISKRNESQPGFESECVVCLEGFKQGQWCRKLVGCGHVFHRKCLDTWLLKVAACPTCRTPTTFD 541
            C S GL P E++SL    + +R  ++   E EC +CL GF++G+  + L  C H +H +C+D WL   ++CP CR     D
Sbjct:   76 CRSGGLDPAEIRSLPVV-LCRRERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVD 155
The following BLAST results are available for this feature:
BLAST of EY666313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATL3D_ARATH2.545e-1137.04RING-H2 finger protein ATL3D OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-021-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666313 ID=EY666313; Name=EY666313; organism=Citrus sinensis; type=EST; length=758bp
CCACGCGTCCGATTCGATTCTTCTTCATTCACGCGTTTCATCAAACACCT
TATCTGCCGCCATGCCTCCGCCGCAACGATACCAACACTACGACGACGAC
GTCGACATCCACCACCGCCATGATTCTCCCCCGCTGCCGCCGAAACCAAA
TCCGAAAATCCTCCCAATCCTTCTCAAGGTGATAATAATGACTCTAATAA
CCTCGATGTTCTTCCTTCTTCTCGGCCTGGTTGCTTTCCTACTCCTCCCT
ATCCTCTTTACGTCTCTCAACCGCCACCACGACCGCCACCGCGGAGCCTG
TCACTCAGATGGGTTGTCGCCCAAAGAACTGAAAAGCTTATCCCAGTTCA
AAATTTCCAAGAGAAACGAATCCCAGCCGGGGTTTGAATCTGAGTGCGTG
GTTTGTTTGGAAGGATTTAAACAAGGGCAGTGGTGTAGGAAGCTCGTGGG
CTGTGGCCATGTTTTTCATAGGAAGTGTTTGGATACGTGGCTGCTTAAAG
TCGCTGCGTGTCCGACTTGTCGGACTCCGACAACCTTTGACAGATTTTTG
AGGAACTCATTTTATTCAATCTGGGAGAACTAAATAGTTGCGTTGTCATT
TTTGGCTCGAGGATTCAGTAATAAATTGGTACCCACTTATAGTAGCTTGG
ATAGTTACAGTTTTTAGCTTTCCTATATTTGCACTTTCTTTGGCTCTCAA
TATGGGGTGGCTTGGTTAAACCAAGTTAGTTTGGTGCCAAAAAAAAAAAA
GAGAAAAA
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