EY666280

Overview
NameEY666280
Unique NameEY666280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666280 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.907e-90
Identity = 170/229 (74.24%), Postives = 187/229 (81.66%), Query Frame = 3
Query:   60 AATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXXLPP--KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGCVESKRWVDFFNPESQSIEWATPWSRTAENFANGTGEKGYPGGKVF*SL-MAGWEN*GWCLHSWNLKSLRRLKVAEKK 731
            A TS AVLNGL SSF+ GG KSQALLA     RV           L    KKSWIPAV+GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFG+LLGTQL+LMG VESKRWVDFF+P+SQS+EWATPWS+TAENFAN TGE+GYPGGK F  L +AG  N G  ++  + + L RLKVAE K
Sbjct:    2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNG--VYVPDTEKLERLKVAEIK 228          
BLAST of EY666280 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 2.461e-89
Identity = 168/230 (73.04%), Postives = 188/230 (81.74%), Query Frame = 3
Query:   54 MAAATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXX-LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGCVESKRWVDFFNPESQSIEWATPWSRTAENFANGTGEKGYPGGKVF*SL-MAGWEN*GWCLHSWNLKSLRRLKVAEKK 731
            M   ++ AVLNGL SSF+ GGKK+QALL    T RVT           + PKKSWIPAVK GGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMG VESKRWVDFF+ +SQSI+WATPWS+TAENFAN TGE+GYPGGK F  L +AG  N G  ++  + + L RLK+AE K
Sbjct:    1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNG--VYVPDTEKLERLKLAEIK 228          
BLAST of EY666280 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 8.754e-87
Identity = 163/235 (69.36%), Postives = 189/235 (80.43%), Query Frame = 3
Query:   54 MAAATSG-AVLNGLGSSFINGGKKS-QALLAGTNRV------TXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGCVESKRWVDFFNPESQSIEWATPWSRTAENFANGTGEKGYPGGKVF*SL-MAGWEN*GWCLHSWNLKSLRRLKVAEKK 731
            MAAATS  A++NG  S F++GGKKS Q+LL   ++V      T            PKKSWIPAVKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIFVGQAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMG VESKRWVDFF+P+SQS+EWATPWSRTAENF+N TGE+GYPGGK F  L +AG  + G  +++ +   L RLK+AE K
Sbjct:    1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNG--VYNPDTDKLERLKLAEIK 233          
BLAST of EY666280 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.550e-22
Identity = 64/162 (39.51%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  192 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGCVESKRWVDFFNPESQSIEWATPWSRTAENFANGTGEKGYPGGKVF*SLMAGW 659
            P +  W P          PEWLDGSLPGD+GFDPLGLG DP  LKW  +AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+G  E +RW D   P   + +   P      N   GT + GYPGG  F  L  GW
Sbjct:   63 PDRPLWFPGSTP------PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFP-----NNKLTGT-DVGYPGGLWFDPL--GW 207          
BLAST of EY666280 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.747e-21
Identity = 69/213 (32.39%), Postives = 98/213 (46.01%), Query Frame = 3
Query:   39 VEIISMAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGCVESKRWVDFFNPESQSIEWATPWSRTAENFANGTGEKGYPGGKVF*SLMAGW 659
            V   S ++  +G+++    +SF+ GG++ +     T               P +  W P          P WLDGSLPGD+GFDPLGL  DP  L+W ++AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+G  E +RW D   P   + +   P      N   GT + GYPGG  F  L  GW
Sbjct:   13 VAFSSPSSRRNGSIVGTTKASFL-GGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTP------PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFT---DTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFP-----NNKLTGT-DVGYPGGLWFDPL--GW 207          
BLAST of EY666280 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.020e-18
Identity = 55/150 (36.67%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  198 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGCVESKRWVDFFNPESQSIEWATPWSRTAENFANGTGEKGYPGG 629
            K  W+P       L +P +L GSLPGD GFDPLGL +DP  L+W+ +AEL++GRWAM  V G+ + + ++ I       W+ AG +       S  +L   + +L   VE +RW D  NP S + +         + ++   GE GYPGG
Sbjct:   53 KGEWLPG------LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFA---SSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPAGEVGYPGG 187          
BLAST of EY666280 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.020e-18
Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  198 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGCVESKRWVDFFNPESQSIEWATPWSRTAENFANGTGEKGYPGG 629
            K  W+P       L +P++L GSL GD GFDPLGL +DP  LKW+ +AEL++GRWAM  V G+ + + ++ I       W++AG +       S  +L   + +L   VE +RW D  NP S + +         + ++   GE GYPGG
Sbjct:   54 KGEWLPG------LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPKGEVGYPGG 188          
BLAST of EY666280 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.686e-13
Identity = 48/102 (47.06%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  246 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGCVESKR 518
            P +LDGS PGD+GFD LGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A     W +A    A PG  A     P  +G+L   L  + L +  VE +R
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157          
BLAST of EY666280 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.202e-13
Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  198 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG---ADPGAIAPFSFGSLLGTQLLLMGCVESKRWVDFFNPESQSIEWATPWSRTAENFANGTGEKGYPG 626
            K SW+P ++      +P +LDGSL GD GFDPL L +DP  L+W+ +A++++GRWAM  V G+ + +  +      A      PG    F+  S      +    VE +RW D  NP S + +         ++++    E GYPG
Sbjct:   33 KGSWLPGLQ------SPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQD------PIFKSYSLPPHECGYPG 166          
BLAST of EY666280 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.263e-13
Identity = 48/155 (30.97%), Postives = 68/155 (43.87%), Query Frame = 3
Query:  207 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGCVESKR 518
            W P  K      +PE+LDGSL GDYGFDP GLGK   +L++                                           +RE ELIHGRWAM A +G    +  +G+ W +AG        +  G   PFS  +L+  ++L++G +E +R
Sbjct:   55 WFPGAK------SPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR 203          

HSP 2 Score: 22.3274 bits (46), Expect = 2.263e-13
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  628 GKFFDPLWLA 657
            GKFFDPL LA
Sbjct:  217 GKFFDPLGLA 226          
The following BLAST results are available for this feature:
BLAST of EY666280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CB4A_SOLLC2.907e-9074.24Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC2.461e-8973.04Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL8.754e-8769.36Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB12_PETHY7.550e-2239.51Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC3.747e-2132.39Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA1.020e-1836.67Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH1.020e-1836.67Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB11_SOLLC1.686e-1347.06Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB120_HORVU2.202e-1332.88Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB4B_ARATH2.263e-1330.97Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-021-B03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666280 ID=EY666280; Name=EY666280; organism=Citrus sinensis; type=EST; length=934bp
CCACGCGTCCGAGCCCATTCTGCAGCTACAGAAGTCAAGTAGAGATCATA
TCTATGGCGGCTGCAACATCCGGGGCTGTGTTAAACGGATTGGGTTCTTC
ATTCATAAATGGTGGCAAGAAGAGCCAGGCTCTTTTGGCTGGCACGAATA
GAGTGACAAGTTCTAAAAAGTCAGTTGTTGTAGCTGCTCTTCCACCTAAA
AAATCTTGGATTCCTGCTGTTAAAGGTGGTGGCAACCTCATTAATCCCGA
ATGGCTCGATGGCTCTCTCCCAGGTGACTACGGATTCGACCCACTTGGGC
TTGGAAAGGACCCAGCATTCCTGAAATGGTACAGAGAAGCAGAACTGATC
CACGGACGATGGGCAATGGCTGCAGTTGTTGGGATATTCGTCGGACAGGC
GTGGAGTGGGATTCCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCATAG
CACCCTTCTCCTTCGGCTCACTCCTGGGGACCCAGCTTCTCCTTATGGGG
TGCGTTGAGAGCAAGCGGTGGGTTGATTTTTTCAATCCTGAATCTCAATC
CATTGAATGGGCAACACCTTGGTCAAGAACTGCTGAAAACTTTGCCAATG
GGACTGGTGAAAAAGGCTACCCTGGTGGGAAAGTTTTTTGATCCCTTATG
GCTGGCTGGGAAAATTAAGGATGGTGTCTACATTCCTGGAACTTGAAAAG
CTTGAGGAGGTTGAAAGTTGCCGAGAAGAAAACATGCTAGGGTTGGTAAG
AGGGGAGCTGGATTGATTTTCAACTATTGAAACTGGCCAGAGGGAACACA
CCCCACTGGGGGGTTCTGGCGTGTAGAAAAACGTCAGTCATGGACAAAAA
CACCATTGATGTGGAGTGTATAGAGGTATAAAAACACGAGAGACAACGCA
CGCGCACACATCAAAGGCGACTCGAGGTGGTGAA
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