EY666263

Overview
NameEY666263
Unique NameEY666263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11587 contig Csv1_Contig11587:248..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY666263 vs. ExPASy Swiss-Prot
Match: UBP27_ARATH (Ubiquitin carboxyl-terminal hydrolase 27 OS=Arabidopsis thaliana GN=UBP27 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.534e-50
Identity = 110/191 (57.59%), Postives = 137/191 (71.73%), Query Frame = 1
Query:  109 LVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECE-----EPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESS-LVDAFEAASCRILS-LKRREVQSEQKRWRKHFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPM 660
            LVPGLQNLGNNCFLNVILQALASC  F  FLQ V+ +       E +E LPLT AL++LL+EL  VG  R V +P+KVM+ +  Y +NFNLTSQQDA EA LHL+SSL+EE +  Y P++SS L D   + + R+L+  +      E KRW KH  GPFDGILGS L C++C SQISL++QFFH+LPLSP+
Sbjct:   72 LVPGLQNLGNNCFLNVILQALASCKDFRSFLQWVLEDARGSLAGEQEEQLPLTFALSALLQELGTVGSRRSVSNPRKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEIVVCYRPSQSSNLSDILFSRNLRMLAPSEGLHGLMELKRWHKHLRGPFDGILGSTLMCRTCSSQISLEFQFFHTLPLSPL 262          
BLAST of EY666263 vs. ExPASy Swiss-Prot
Match: UBP30_DANRE (Ubiquitin carboxyl-terminal hydrolase 30 OS=Danio rerio GN=usp30 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.733e-14
Identity = 65/207 (31.40%), Postives = 96/207 (46.38%), Query Frame = 1
Query:   70 WLSEKENRLEKLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQ----KVMGECEEPDEDLPLTVALASLLEELCL--VGETRLVLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVD------AFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLS 654
            W    + R ++  +VPGL NLGN CF+N +LQ LA+C  F+ +L+    +   + E  + +  L+ +L  LL+ L     GE   VL    ++ A+ LY  + +   +QDA E F  L SSL EE  +   P  + L D      + E+    I       +      WR     PF G L S + C+ C  Q  + Y  F SL LS
Sbjct:   49 WGPISDRRKKRKGMVPGLLNLGNTCFMNSLLQGLAACPSFIRWLEDFTSQNSADRERTERETQLSRSLMQLLKALSSHDPGEDD-VLDAGGLLEALRLYRWHISSFEEQDAHELFHVLTSSLEEE--QERQPRVAHLFDMQTLEKSVESKEKNISCRSGGPLHPIPSLWRTRH--PFHGRLTSYMACKRCEQQSPVHYDSFDSLSLS 250          
BLAST of EY666263 vs. ExPASy Swiss-Prot
Match: UBP30_HUMAN (Ubiquitin carboxyl-terminal hydrolase 30 OS=Homo sapiens GN=USP30 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.148e-13
Identity = 62/214 (28.97%), Postives = 92/214 (42.99%), Query Frame = 1
Query:   70 WLSEKENRLEKLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGEC----EEPDEDLPLTVALASLLEEL-CLVGETRLVLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAF------EAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPMPG*WFH 678
            W    E +  +  LVPGL NLGN CF+N +LQ L++C  F+ +L++   +     +EP     L++ L  LL+ L C       VL    ++  + +Y    +   +QDA E F  + SSL +E      P  + L D        E    +I    R         W+     PF G L S + C+ C  Q  + +  F SL LS     W H
Sbjct:   53 WGPITERKKRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLLHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDE--RDRQPRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQH--PFHGRLTSNMVCKHCEHQSPVRFDTFDSLSLSIPAATWGH 262          
BLAST of EY666263 vs. ExPASy Swiss-Prot
Match: UBP30_XENTR (Ubiquitin carboxyl-terminal hydrolase 30 OS=Xenopus tropicalis GN=usp30 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.500e-13
Identity = 66/219 (30.14%), Postives = 98/219 (44.75%), Query Frame = 1
Query:  109 LVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPD---EDLPLTVALASLLEELC-LVGETRLVLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVD----AFEAASCRILSLKRR-EVQSEQKRWRKHFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPMPG*WFHYSIWMHTGRLPKAVSHWPTT 738
            LVPGL NLGN CF+N +LQ LASC  F+ +L     +  + +   E   L+V L  LL+ LC   G    VL    ++  +  +    +   +QDA E F  L SSL +E      P+ + L D     F     R +  + +  +     +W+     PF G L S + C+ C  Q  + Y  F SL LS         + W H   L + + H+ +T
Sbjct:   83 LVPGLLNLGNTCFMNSLLQGLASCPSFIRWLADFTSKYRQENNTTEHQHLSVTLLHLLKALCNQEGTEDEVLDASPLLEVLRAHRWQISSFEEQDAHELFHVLTSSLEDE--RDRRPHVTHLFDLDSLEFPLEPQRQIHCRTQVPIYPIPSQWKSQH--PFHGRLTSNMVCKHCQHQSPMRYDTFDSLSLS------IPVATWGHPITLDQCLQHFIST 291          
BLAST of EY666263 vs. ExPASy Swiss-Prot
Match: UBP30_MOUSE (Ubiquitin carboxyl-terminal hydrolase 30 OS=Mus musculus GN=Usp30 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.700e-13
Identity = 61/214 (28.50%), Postives = 93/214 (43.46%), Query Frame = 1
Query:   70 WLSEKENRLEKLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGEC----EEPDEDLPLTVALASLLEEL-CLVGETRLVLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAF------EAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPMPG*WFH 678
            W    E +  +  LVPGL NLGN CF+N +LQ L++C  F+ +L++   +     + P     L++ L +LL+ L C       VL    ++  + +Y    +   +QDA E F  + SSL +E      P  + L D        E A  ++    R         W+     PF G L S + C+ C  Q  + +  F SL LS     W H
Sbjct:   53 WGPITERKKRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFVKWLEEFTTQYSRDQQGPHTHQCLSLTLLNLLKALSCQEVTEDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDE--RDRQPRVTHLFDVHSLEQQSEMAPRQVTCHTRGSPHPTTNHWKSQH--PFHGRLTSNMVCKHCEHQSPVRFDTFDSLSLSIPAATWGH 262          
The following BLAST results are available for this feature:
BLAST of EY666263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UBP27_ARATH1.534e-5057.59Ubiquitin carboxyl-terminal hydrolase 27 OS=Arabid... [more]
UBP30_DANRE6.733e-1431.40Ubiquitin carboxyl-terminal hydrolase 30 OS=Danio ... [more]
UBP30_HUMAN1.148e-1328.97Ubiquitin carboxyl-terminal hydrolase 30 OS=Homo s... [more]
UBP30_XENTR1.500e-1330.14Ubiquitin carboxyl-terminal hydrolase 30 OS=Xenopu... [more]
UBP30_MOUSE5.700e-1328.50Ubiquitin carboxyl-terminal hydrolase 30 OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-015-H07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666263 ID=EY666263; Name=EY666263; organism=Citrus sinensis; type=EST; length=863bp
CCACGCGTCCGCTGGTTTTGTCTTGGCTTTGAAAAAGATGCCAAAATTGG
AAACTTGAGTGGCTTTTCATGGCTATCTGAGAAAGAGAATCGTTTGGAGA
AGTTGTGCTTAGTACCTGGATTGCAGAATCTTGGCAATAATTGTTTTTTG
AATGTTATATTGCAGGCTCTAGCTAGTTGCACATGCTTTCTACCTTTCCT
TCAAAAGGTTATGGGGGAGTGTGAGGAACCAGATGAAGACTTGCCGCTTA
CAGTAGCTTTGGCTTCCTTGTTAGAAGAGTTATGTTTAGTTGGTGAAACA
AGGCTTGTATTAAGTCCGCAAAAAGTGATGCTTGCTATGGAACTTTATAT
TCAAAACTTCAATCTAACAAGCCAGCAGGATGCAGAAGAAGCATTTCTTC
ATCTTATGTCCTCTTTAAGGGAAGAATTTTTGGAGTCTTATAGTCCAAAT
GAAAGTTCTCTGGTGGATGCTTTTGAAGCTGCAAGTTGTCGAATTCTTTC
TCTAAAAAGGAGGGAGGTCCAGAGTGAGCAGAAAAGATGGAGGAAACACT
TCTTTGGGCCATTTGATGGGATTCTTGGTAGCATTTTAACTTGTCAGAGT
TGTTTATCTCAGATTTCACTGGACTATCAATTTTTTCACAGCTTACCTCT
TTCACCCATGCCTGGATAGTGGTTCCACTATTCCATTTGGATGCACACTG
GGAGATTGCCTAAAGCAGTTTCTCACTGGCCGACAACTTGAGAATTACCA
CTGGCACCACTGCTGGCACATTGCTGCCATAAAGTATTTATCTATAACAG
AAGCCAATGAGATGGAGATTGGAAAATCCGGAGAATGTATGCCACAGATT
CCTGGACTGTCGG
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