EY666248

Overview
NameEY666248
Unique NameEY666248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY666248_ssr696 microsatellite EY666248_ssr696:696..707. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.118e-49
Identity = 95/172 (55.23%), Postives = 123/172 (71.51%), Query Frame = 3
Query:  207 PTFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGGGSTDRVVRAITELGFALGSKGVLKGTSHDLDS-GRKEVKSE 719
            P+F F+ YM  K   +++AL+ A+P+Q P KIHE+MRYSLLAGGKR+RP LC+A+CELVGG++S+ MP ACA+EM HTMSLIHDDLP +DNDDLRRGK TNH VFGE              FEH+A  T   S+ R+VRA+ EL  A+G++G++ G   D++S G  EV  E
Sbjct:   75 PSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLE 246          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 8.010e-48
Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 3
Query:  210 TFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGGG--STDRVVRAITELGFALGSKGVLKGTSHDLDSGRKEVKSEG 722
            +F F  Y+ +K+  V+KALD A+P++ P KIHEAMRYSLLAGGKR+RPVLCIA+CELVGG+ES  MP ACA+EM HTMSLIHDDLP +DNDDLRRGK TNH VFGE              FEH+A+ T     S  RVVRA+ EL  A+G++G++ G   D+ S   ++   G
Sbjct:   73 SFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVG 245          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.046e-47
Identity = 97/178 (54.49%), Postives = 124/178 (69.66%), Query Frame = 3
Query:  192 VKIALPTFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGGG-STDRVVRAITELGFALGSKGVLKGTSHDLDSGRKEVKSEG 722
            +K +  +F F  Y+  K+  V+KALD A+P++ P KIHEAMRYSLLAGGKR+RPVLCIA+CELVGG+ESL MP  CA+EM HTMSLIHDDLP +DNDDLRRGK TNH V+GE              FEH+A+ T    S  RVVRA+ EL  A+G++G++ G   D+ S   ++ + G
Sbjct:   63 LKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVG 240          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.856e-47
Identity = 90/162 (55.56%), Postives = 117/162 (72.22%), Query Frame = 3
Query:  210 TFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGGGSTDRVVRAITELGFALGSKGVLKGTSHDLDS 695
            +F F+ YM  K+  V+KAL++A+ ++ P KIHE+MRYSLLAGGKR+RP+LCIA+CEL GG ES+ MP ACA+EM HTMSL+HDDLP +DNDDLRRGK TNH VFGE              FEH+A  T G S++R+VR + EL   +GS+G++ G   D+ S
Sbjct:   63 SFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCS 224          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.721e-45
Identity = 104/245 (42.45%), Postives = 141/245 (57.55%), Query Frame = 3
Query:   27 SALLKNSPLNY--FKMPFMIPFPNLKPFPMKN-----NACHAENLASVKPSQGAESIMNIKPVKIALPTFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGGGSTDRVVRAITELGFALGSKGVLKGTSHDLDSGRKEVKSEGNWSTIL 740
            + L+ N  L+Y  F     IP  N K  P  N     +      +A+ K  +  E+    +P       F F+ Y+T K+  V+KALDEA+ ++ P  IHEAMRYSLLAGGKR+RP+LC+A+CELVGG++   M  ACA+EM HTMSLIHDDLP +DNDDLRRGK TNH ++GE              FEH+   T G +  R+V A+ EL  ++G++G++ G   D       +K  GN S  L
Sbjct:   14 ACLVFNQTLSYKSFNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEP-------FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVAD-------IKCTGNASVSL 244          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.414e-44
Identity = 88/171 (51.46%), Postives = 119/171 (69.59%), Query Frame = 3
Query:  210 TFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGGGSTDRVVRAITELGFALGSKGVLKGTSHDLDSGRKEVKSEG 722
            TF+F+ YM SK+  V+KAL+EA+P+  P KIHEAMRY++LA GKR+RP+LC+ASCELVGG E+  MP ACA+EM HTMSLI DDLP +DNDDLRRGK T H V+GE              FEH+   T   S++R+V A+ EL  ++G++G++ G + D+ S   ++   G
Sbjct:   82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMT--TAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVG 250          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.548e-43
Identity = 86/171 (50.29%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  210 TFQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGGGSTDRVVRAITELGFALGSKGVLKGTSHDLDSGRKEVKSEG 722
            +F F+ YM SK+  +++ALDEA+P+  P  IH+AMRY++LAGGKR+RP+LC+A+CELVGG+E L +  ACA+EM HTMSLI DDLP +DNDDLRRGK T H VFGE              FEH+       S+ ++VRA+ EL  ++G+KG++ G + DL S   E    G
Sbjct:   78 SFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLT--EADVSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVG 246          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.239e-40
Identity = 84/164 (51.22%), Postives = 110/164 (67.07%), Query Frame = 3
Query:  213 FQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGG-GSTDRVVRAITELGFALGSKGVLKGTSHDLDSGR 701
            F F+ YM  K+  V+ ALD ++P++ P  + EA+RYSLLAGGKR+RP+LCIA CELVGGDE+  M  ACA+EM HT SLIHDDLP +DN DLRRGK TNH V+GE              FEH+   + G  + +R++RA+ EL  A+G+ G++ G   DL S R
Sbjct:   64 FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASER 227          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 7.515e-38
Identity = 81/183 (44.26%), Postives = 117/183 (63.93%), Query Frame = 3
Query:  198 IALPTFQFEEYMTSKSRKVDKALDEALPM--------QHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTG-GGSTDRVVRAITELGFALGSKGVLKGTSHDLDSGRKEVKSE 719
            IA    +F  YM +K++ ++KALD ++P+        +   ++H+AMRY+LL GGKR+RP+LC+ +CELVGG ES  MP ACA+EM H  SLI DDLP +D+D LRRGK TNH VFGE+T             +   A T  G +++RV+RA+ E+  A+G++G++ G + DL   R   K+E
Sbjct:   25 IASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILASNALRSLAVKQTLASTSLGVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNE 207          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.673e-35
Identity = 75/175 (42.86%), Postives = 107/175 (61.14%), Query Frame = 3
Query:  213 FQFEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGGGSTDRVVRAITELGFALGSKGVLKGTSHDLDSGRKEVKSEGNWSTI 737
            F    Y+  +   V+  L++++P  +P  I++++RYSL AGGKRIRP+LC+ASCEL GG   + +P ACALEM HTMSLIHDDLPA+DND  RRGK TNH ++GE              FE +A +T     D +V+ I ++  ++ + G++ G   DL S   E KS+    T+
Sbjct:    8 FNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSS---EGKSDTTLETL 179          
The following BLAST results are available for this feature:
BLAST of EY666248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GGPPS_HEVBR1.118e-4955.23Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH8.010e-4856.07Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_SINAL1.046e-4754.49Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CATRO8.856e-4755.56Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN3.721e-4542.45Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP2_ARATH1.414e-4451.46Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP4_ARATH4.548e-4350.29Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP3_ARATH1.239e-4051.22Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP6_ARATH7.515e-3844.26Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
CRTE_CYAPA2.673e-3542.86Geranylgeranyl pyrophosphate synthetase homolog OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-015-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666248 ID=EY666248; Name=EY666248; organism=Citrus sinensis; type=EST; length=933bp
CCACGCGTCCGCCTAGCTGTACCCATTCAGCTCTCCTCAAGAACTCCCCA
CTCAATTATTTCAAAATGCCCTTTATGATCCCATTTCCGAACTTGAAACC
CTTTCCCATGAAAAATAACGCCTGCCACGCTGAAAACTTAGCTTCGGTAA
AACCATCCCAGGGTGCAGAATCGATCATGAACATCAAGCCGGTAAAGATA
GCTCTACCAACTTTCCAGTTTGAAGAATACATGACCAGCAAGTCGAGAAA
AGTGGACAAAGCATTAGATGAGGCATTGCCCATGCAACATCCAGAAAAAA
TACACGAGGCCATGAGATACTCTCTTCTCGCTGGAGGCAAGCGTATCCGT
CCTGTTCTATGCATTGCTTCATGCGAATTAGTAGGAGGAGATGAGTCCTT
GGTGATGCCAATGGCTTGTGCACTAGAGATGACTCACACGATGTCCCTCA
TTCATGATGATCTCCCTGCACTGGACAACGATGATCTTAGACGAGGGAAA
GCTACAAATCACACAGTCTTTGGTGAACGAACCGCAATTCTTGCAGGTGA
TGCTCTGCTTGCCCTTGCATTTGAACATGTAGCAGCCAAGACCGGTGGTG
GGTCAACTGACCGCGTGGTTCGAGCCATTACAGAACTGGGGTTCGCACTT
GGGAGCAAAGGGGTCCTGAAAGGAACAAGTCATGACCTTGACAGTGGAAG
GAAGGAAGTGAAGTCTGAAGGGAATTGGAGTACCATCCTGTTGGCCACAA
ACCGCGGAACCTTATAGAAGCATCCGGGGGGTAGGGGGAGGGATAATCCG
AAGGGGGAGAGGAGATTGGAAAGAAAAGAAGTTCAAACCAGTGCGAGGGG
GCAGAGAATTATACAATCAAACGTGGCGAAGGGTGGGTGTAGAAGAAACA
AGAGGGCACGAAGGTGCAAGCGGAGGAATCTCG
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