EY666243

Overview
NameEY666243
Unique NameEY666243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666243 vs. ExPASy Swiss-Prot
Match: CHID1_XENLA (Chitinase domain-containing protein 1 OS=Xenopus laevis GN=chid1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.397e-38
Identity = 92/232 (39.66%), Postives = 128/232 (55.17%), Query Frame = 3
Query:  108 KEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP---PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKVWGTGIAIWEFGQGLDYFF 794
            K+  +DG V+E WS           + R   +  +  +G ALHS          L  + VI P   P +++     FG  +   L+  VD FSLMTYD+S P  PGPN+P+ W+   +QLL   P    R   +KI LG++FYG D+    A+G   I G  Y+ +L++HKP L W++   EH+  +      KHAVFYP+L SI +RL+ A+  GTGIAIWE GQGLDYF+
Sbjct:  182 KDEHFDGFVVEVWSQLGG-------QKRQELVHLLIHIGEALHSAK--------LHFILVIPPAVAPGTDQLGM--FGRKEFDQLAPVVDSFSLMTYDYSSPQRPGPNSPISWVQACVQLL--DPESKWR---KKILLGLHFYGMDYSALGATGE-PILGNRYVEILKEHKPKLLWDQQIAEHYLEYKKNKGGKHAVFYPTLKSIQVRLDLAEELGTGIAIWELGQGLDYFY 390          
BLAST of EY666243 vs. ExPASy Swiss-Prot
Match: CHID1_XENTR (Chitinase domain-containing protein 1 OS=Xenopus tropicalis GN=chid1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.772e-36
Identity = 91/231 (39.39%), Postives = 126/231 (54.55%), Query Frame = 3
Query:  108 KEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPH--DFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKVWGTGIAIWEFGQGLDYFF 794
            K+  +DG V+E WS           + R   +  +  +G AL        R   L+ + VI PP       H   FG  +   L+  VD FSLMTYD+S P  PGPN+P+ W+   +QLL   P    R   +KI LG++FYG D+    ASG   I G  Y+ +L++HKP L W++   EH+  +      KHAVF+P+L SI +RL+ A+  GTGI+IWE GQGLDYF+
Sbjct:  183 KDERFDGFVVEVWSQLGG-------QKRQELVHLLTHIGEAL--------RLAKLRFILVI-PPALAPGTDHLGMFGRKEFDQLAPVVDSFSLMTYDYSSPQRPGPNSPITWVQACIQLL--DPESKWR---KKILLGLHFYGMDYSALGASGE-PILGNRYIEILKEHKPKLLWDQQIAEHYLEYKKNKGGKHAVFFPTLKSIQVRLDLAEELGTGISIWELGQGLDYFY 391          
BLAST of EY666243 vs. ExPASy Swiss-Prot
Match: CHID1_DANRE (Chitinase domain-containing protein 1 OS=Danio rerio GN=chid1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.559e-35
Identity = 90/227 (39.65%), Postives = 121/227 (53.30%), Query Frame = 3
Query:  120 YDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKF-QPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWI-SFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKVWGTGIAIWEFGQGLDYFF 794
            +DG  LE WS              N   E +  + +   ++N+ +     L  V VI P  +    QP  FG  D + L+  VD FSLMTYD+SGP  PGP+APL W+    LQL              KI LG+N YG DF  S   G   + G   + LL++ KP LQW++N+GEHFF +   N VKH V+YP+L  + +R+  A   GTGI++WE GQGLDYF+
Sbjct:  185 FDGYTLELWSQLGG----------NKRKELVHLVTHLCETLNAGK-----LTCVLVIPPSVAPGTGQPGMFGRDDFEKLAPVVDAFSLMTYDYSGPGRPGPSAPLPWVRECVLQLA------PENQWRHKILLGVNMYGLDF--SSHGGAEPLLGARCIELLKEVKPKLQWDENTGEHFFNYKRNNGVKHVVYYPTLKFLQLRISLAAELGTGISMWELGQGLDYFY 388          
BLAST of EY666243 vs. ExPASy Swiss-Prot
Match: CHID1_PONAB (Chitinase domain-containing protein 1 OS=Pongo abelii GN=CHID1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.445e-35
Identity = 86/235 (36.60%), Postives = 124/235 (52.77%), Query Frame = 3
Query:  108 KEMEYDGIVLESWSTWTAY---GILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP---PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKVWGTGIAIWEFGQGLDYFF 794
            K   +DG V+E W+   +    G++H           +  L  ALH           L  + VI P   P +++     F   + + L+  +DGFSLMTYD+S  H PGPNAPL W+   +Q+L   P    RS   KI LG+NFYG D+  S+      + G  Y+  L+ H+P + W+  + EHFF +      +H VFYP+L S+ +RLE A+  G G++IWE GQGLDYF+
Sbjct:  182 KNQHFDGFVVEVWNQLLSQKRVGLIH----------MLTHLAEALHQAR--------LLALLVIPPAITPGTDQLGM--FTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLSWVRACVQVL--DPKSKWRS---KILLGLNFYGMDYATSK-DAREPVVGARYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFY 390          
BLAST of EY666243 vs. ExPASy Swiss-Prot
Match: CHID1_HUMAN (Chitinase domain-containing protein 1 OS=Homo sapiens GN=CHID1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.445e-35
Identity = 86/235 (36.60%), Postives = 124/235 (52.77%), Query Frame = 3
Query:  108 KEMEYDGIVLESWSTWTAY---GILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP---PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKVWGTGIAIWEFGQGLDYFF 794
            K   +DG V+E W+   +    G++H           +  L  ALH           L  + VI P   P +++     F   + + L+  +DGFSLMTYD+S  H PGPNAPL W+   +Q+L   P    RS   KI LG+NFYG D+  S+      + G  Y+  L+ H+P + W+  + EHFF +      +H VFYP+L S+ +RLE A+  G G++IWE GQGLDYF+
Sbjct:  182 KNQHFDGFVVEVWNQLLSQKRVGLIH----------MLTHLAEALHQAR--------LLALLVIPPAITPGTDQLGM--FTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLSWVRACVQVL--DPKSKWRS---KILLGLNFYGMDYATSK-DAREPVVGARYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFY 390          
BLAST of EY666243 vs. ExPASy Swiss-Prot
Match: CHID1_RAT (Chitinase domain-containing protein 1 OS=Rattus norvegicus GN=Chid1 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.829e-34
Identity = 88/235 (37.45%), Postives = 125/235 (53.19%), Query Frame = 3
Query:  108 KEMEYDGIVLESWSTWTAY---GILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP---PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKVWGTGIAIWEFGQGLDYFF 794
            K   +DG V+E WS   +    G++H           +  L  ALH           L ++ VI P   P +++     F   + + L+  +DGFSLMTYD+S    PGPNAPL WI   +Q+L   P    RS   KI LG+NFYG D+  S+ +    I G  Y+  L+ H+P + W+  + EHFF +      +H VFYP+L S+ +RLE A+  G G++IWE GQGLDYF+
Sbjct:  182 KNQHFDGFVVEVWSQLLSQKHVGLIH----------MLTHLAEALHQAR--------LLVILVIPPAVTPGTDQLGM--FTHKEFEQLAPILDGFSLMTYDYSTSQQPGPNAPLSWIRACVQVL--DPKSQWRS---KILLGLNFYGMDYAASKDAREPVI-GARYIQTLKDHRPRVVWDSQAAEHFFEYKKNRGGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFY 390          
BLAST of EY666243 vs. ExPASy Swiss-Prot
Match: CHID1_MOUSE (Chitinase domain-containing protein 1 OS=Mus musculus GN=Chid1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.695e-34
Identity = 88/235 (37.45%), Postives = 125/235 (53.19%), Query Frame = 3
Query:  108 KEMEYDGIVLESWSTWTAY---GILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP---PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKVWGTGIAIWEFGQGLDYFF 794
            K   +DG V+E WS   +    G++H           +  L  ALH           L ++ VI P   P +++     F   + + L+  +DGFSLMTYD+S    PGPNAPL WI   +Q+L   P    RS   KI LG+NFYG D+  S+ +    I G  Y+  L+ H+P + W+  + EHFF +      +H VFYP+L S+ +RLE A+  G G++IWE GQGLDYF+
Sbjct:  182 KNQHFDGFVVEVWSQLLSQKHVGLIH----------MLTHLAEALHQAR--------LLVILVIPPAVTPGTDQLGM--FTHKEFEQLAPILDGFSLMTYDYSTSQQPGPNAPLSWIRACVQVL--DPKSQWRS---KILLGLNFYGMDYAASKDAREPVI-GARYVQTLKDHRPRVVWDSQAAEHFFEYKKNRGGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFY 390          
BLAST of EY666243 vs. ExPASy Swiss-Prot
Match: CHID1_BOVIN (Chitinase domain-containing protein 1 OS=Bos taurus GN=CHID1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.899e-32
Identity = 85/236 (36.02%), Postives = 122/236 (51.69%), Query Frame = 3
Query:  108 KEMEYDGIVLESWSTWTAY---GILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPH----SEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKVWGTGIAIWEFGQGLDYFF 794
            K   +DG+V+E W+        G++H           +  +  ALH         Q   LV+++ PP     + K     F   + + L+  +DGFSLMTYD+S     GPNAPL W+   +Q+L   P    RS   KI LG+NFYG D+  S+      I G  Y+  L+ H+P + W+  + EHFF +      +H VFYP+L S+  RLE A+  G G++IWE GQGLDYF+
Sbjct:  182 KSQHFDGLVVEVWNQLLVQKHAGLIH----------LLTHMAEALH---------QARLLVFLVIPPAVAPGTNKLGM--FTNTEFEQLAPVLDGFSLMTYDYSTAQPAGPNAPLPWVRACVQVL--DPKSKWRS---KILLGLNFYGMDYSASK-DAREPIIGARYIQTLKDHRPQVVWDSQAAEHFFEYKKSRGGRHVVFYPTLKSLQERLELAQELGVGLSIWELGQGLDYFY 390          
BLAST of EY666243 vs. ExPASy Swiss-Prot
Match: CHID1_DICDI (Chitinase domain-containing protein 1 OS=Dictyostelium discoideum GN=chid1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.041e-28
Identity = 84/230 (36.52%), Postives = 132/230 (57.39%), Query Frame = 3
Query:  108 KEMEYDGIVLESWSTWTAYGILH-DPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPA-LQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKVWGTGIAIWEFGQGLDYF 791
            K+  YDG+V+E        GI+H + +LR+    F+  L   LHS+      K+ + ++Y    P  +K Q   FG  D + LS+ +DG SLMTYDF GP   G NAP  W+   L+ LL +   G    ++KIF+GI FYG  + + E     AI G E++++L+++K   L++++N+ EH F + ++   + ++ YPSL+ I  R++ A  +   I+IWE GQGLDYF
Sbjct:  179 KKNNYDGLVIE--------GIVHINKQLRD---PFLISLSEKLHSIG-----KEIILVIY----PFRQKGQETGFGAKDFELLSNHIDGVSLMTYDF-GPSG-GMNAPKVWVEDNLKFLLPN---GENKNSKKIFMGIPFYG--YKIGENDQSDAIVGSEFISVLKQNKSKKLKFDQNTHEHIFTYKNKKNQQVSMTYPSLLFIEDRIQLANKYKVSISIWEIGQGLDYF 381          
The following BLAST results are available for this feature:
BLAST of EY666243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CHID1_XENLA9.397e-3839.66Chitinase domain-containing protein 1 OS=Xenopus l... [more]
CHID1_XENTR1.772e-3639.39Chitinase domain-containing protein 1 OS=Xenopus t... [more]
CHID1_DANRE2.559e-3539.65Chitinase domain-containing protein 1 OS=Danio rer... [more]
CHID1_PONAB7.445e-3536.60Chitinase domain-containing protein 1 OS=Pongo abe... [more]
CHID1_HUMAN7.445e-3536.60Chitinase domain-containing protein 1 OS=Homo sapi... [more]
CHID1_RAT2.829e-3437.45Chitinase domain-containing protein 1 OS=Rattus no... [more]
CHID1_MOUSE3.695e-3437.45Chitinase domain-containing protein 1 OS=Mus muscu... [more]
CHID1_BOVIN5.899e-3236.02Chitinase domain-containing protein 1 OS=Bos tauru... [more]
CHID1_DICDI1.041e-2836.52Chitinase domain-containing protein 1 OS=Dictyoste... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-015-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666243 ID=EY666243; Name=EY666243; organism=Citrus sinensis; type=EST; length=904bp
CCACGCGTCCGGTGTTACCCAGAGTGGTTCTGGAAGCATTTCCAAAGGAG
CTTCTCAGAAAGAAGAAACTGAGGGACAAAGCCATTGACCTTATATTAAC
AGAGTGCAAGGAAATGGAATATGATGGTATAGTGCTAGAGTCTTGGTCCA
CGTGGACAGCTTATGGCATTTTGCATGATCCAGAATTGCGGAATATGGCA
CTAGAGTTTATAAAACAACTTGGAAATGCGCTGCACAGTGTGAACTCAGT
GAGAAACAGGAAGCAACATTTGCAGTTGGTCTATGTCATAGGTCCACCAC
ATTCAGAGAAGTTCCAACCACATGACTTTGGGCCAGTGGATCTGCAGAGC
TTGAGTGATGCCGTAGATGGTTTCTCATTAATGACTTATGACTTCTCAGG
TCCCCATAACCCTGGTCCTAATGCTCCACTGAAGTGGATAAGTTTTACCC
TGCAGCTGCTCCTTGGTAGCCCTGGCATTGGCACTCGTAGCTTAGCTAGG
AAGATATTTCTTGGCATCAATTTCTATGGAAATGATTTTGTCCTTTCAGA
AGCATCAGGTGGTGGAGCCATCACTGGAAGGGAGTACCTCAACTTATTGC
AGAAGCACAAGCCTGCACTCCAGTGGGAAAAGAACAGTGGGGAGCACTTC
TTCTTCTTCTCTGATGAAAATCAAGTCAAGCATGCTGTGTTTTACCCTTC
ATTAATATCAATTTCCATGCGACTAGAGGAAGCTAAAGTATGGGGAACTG
GCATTGCCATCTGGGAATTTGGGCAAGGGTTGGATTACTTTTTTTGATCT
ACTGGAACACCCACTACTACGGTTCTTCTTCCTAACCTGGAAGTATAATT
TTTAGGATTCCCTTTAACATTTTTTCCTCCCCGAAAAAAGGTAACTAACA
TTTT
back to top