CX676198

Overview
NameCX676198
Unique NameCX676198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX676198 vs. ExPASy Swiss-Prot
Match: NXN_XENLA (Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = 3 
Query:   24 FEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 377
            FE+VLVS DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E++     K FP+    + E+      + +  P  V  V  E E + + AK  +
Sbjct:  208 FEIVLVSADRSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDPKGEVITRQGRVEVLRDIDCKEFPWHPKPVVELTELNAVQLNEGPCLVLFVDSEDEGESEAAKQLI 327
[Close]
BLAST of CX676198 vs. ExPASy Swiss-Prot
Match: NXN_HUMAN (Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 40/124 (32.26%), Postives = 68/124 (54.84%), Query Frame = 3 
Query:   12 ANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 377
            A   FE++ VS DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+++    + FP+    + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:  225 AGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDEDCREFPWHPKPVLELSDSNAAQLNEGPCLVLFVDSEDDGESEAAKQLI 348
[Close]
BLAST of CX676198 vs. ExPASy Swiss-Prot
Match: NXN_MOUSE (Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 3 
Query:   24 FEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 377
            FE++ VS DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+++    + FP+    + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:  229 FEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDEDCREFPWHPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 348
[Close]
BLAST of CX676198 vs. ExPASy Swiss-Prot
Match: NXN_DANRE (Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 3 
Query:   24 FEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 377
            FE+V VS DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+L+  +G  I+  G+ E+++      FP+    + E+  +   +    P  V  V  E E +LD AK  +
Sbjct:  212 FEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMITRQGRVEILNDPDCGLFPWHPRPVLELSESNAVQLHEGPCLVLFVDAEEEGELDPAKELI 331
[Close]
BLAST of CX676198 vs. ExPASy Swiss-Prot
Match: NXN_BOVIN (Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 40/124 (32.26%), Postives = 67/124 (54.03%), Query Frame = 3 
Query:   12 ANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 377
            A   FE++ VS DR    F    S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+++    + FP+    + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:  225 AGQKFEIIFVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDEDCRGFPWHPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 348
The following BLAST results are available for this feature:
BLAST of CX676198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NXN_XENLA2.228e-1235.83Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1[more]
NXN_HUMAN6.483e-1232.26Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2[more]
NXN_MOUSE1.444e-1132.50Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1[more]
NXN_DANRE1.444e-1135.83Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1[more]
NXN_BOVIN1.444e-1132.26Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_67G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-67G11-M21-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676198 ID=CX676198; Name=CX676198; organism=Citrus sinensis; type=EST; length=565bp
TCAAAACCACAGCAAATCACTGCTTTGAAGTTGTTTTAGTCTCTACAGAT
CGAGACCACAAAGAATTTGATCTCAATCATAGTATCATGCCATGGCTGGC
AATTCCTTATGAGGACAGGGCACGACAAGACCTGTGTAGAATCTTCAACA
TCAAAGGGATTCCGGCTTTAGTCCTAATTGGACCAGATGGGAAGACAATT
AGCACAAATGGGAAGGAGATGATCTCCCTGTATGGTGCTAAAGCTTTTCC
ATTTACAGAGTCAAGGATTGCAGAAATAGAAACAGCCTTGAAAAAGGAAG
GAGATGCATTGCCTCGAGAAGTGAAGGACGTGAAGCATGAACATGAACTA
AAACTAGACATGGCCAAAGCTTACGTATGTGACTGCTGCAAAATGAGAGG
GAGGTTCTGGGCATTCTCTTGTGATGTGTGCAACTATGACCTTCATCCTA
AATGTGTGGAAGGAATAAACCTTAATTTGTAAAAGGCAACAGCCAGCCGG
AAACTTTGATAGAAATATATTTATACCCCATATAATAATAAACTTATGGT
TAAATTAAAAAAAAA
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