EY666233

Overview
NameEY666233
Unique NameEY666233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8611 contig Csv1_Contig8611:196..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY666233 vs. ExPASy Swiss-Prot
Match: ENDUA_XENLA (Poly(U)-specific endoribonuclease-A OS=Xenopus laevis GN=endou-A PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 47/112 (41.96%), Postives = 72/112 (64.29%), Query Frame = 2
Query:   17 QEVSGFHNWLQFYLEEAKGNVDYQGYIFPRRRGQIPDSETQLLTVQFEWNDILKSVSTTLVGVSPEFEIALYTLCFFVGGED---NYVQLGPYPVNIKCYRFGDRIGSVFPI 343
            QE+ G HNW+QFYL+E + N+DY+GY+  + + + PD + Q+L +QF W +++K V ++ +GVSPEFE ALYT+ F    E      V+L  Y + I   R G  IG+ +P+
Sbjct:  172 QEMMGLHNWVQFYLQEKRKNIDYKGYVARQNKSR-PDEDDQVLNLQFNWKEMVKPVGSSFIGVSPEFEFALYTIVFLASQEKMSREVVRLEEYELQIVVNRHGRYIGTAYPV 282          
BLAST of EY666233 vs. ExPASy Swiss-Prot
Match: ENDUB_XENLA (Poly(U)-specific endoribonuclease-B OS=Xenopus laevis GN=endou-B PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.830e-20
Identity = 44/111 (39.64%), Postives = 70/111 (63.06%), Query Frame = 2
Query:   17 QEVSGFHNWLQFYLEEAKGNVDYQGYIFPRRRGQIPDSETQLLTVQFEWNDILKSVSTTLVGVSPEFEIALYTLCFFVGG---EDNYVQLGPYPVNIKCYRFGDRIGSVFP 340
            +E+ G HNW+QFYL+E + N+DY+GY+  + + + PD + Q+L +QF W +++K V ++ +GVSPEFE ALYT+ F           ++L  Y + I   R G  IG+ +P
Sbjct:  172 KEMMGLHNWVQFYLQEKRKNIDYKGYVARQNKSR-PDEDDQVLNLQFSWKEMVKPVGSSFIGVSPEFEFALYTIVFLASQAKMSREVIRLEEYELQIVVNRHGRYIGTAYP 281          
BLAST of EY666233 vs. ExPASy Swiss-Prot
Match: ENDOU_XENTR (Poly(U)-specific endoribonuclease OS=Xenopus tropicalis GN=endou PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.023e-19
Identity = 43/112 (38.39%), Postives = 71/112 (63.39%), Query Frame = 2
Query:   17 QEVSGFHNWLQFYLEEAKGNVDYQGYIFPRRRGQIPDSETQLLTVQFEWNDILKSVSTTLVGVSPEFEIALYTLCFFVGGED---NYVQLGPYPVNIKCYRFGDRIGSVFPI 343
            +E+ G HNW+QFYL+E +  +DY+GY+  + + + PD + Q+L +QF W +++K + ++ +GVSPEFE ALYT+ F    E      V++  Y + I   R G  IG+ +P+
Sbjct:  173 KEIMGLHNWVQFYLQEKRKTIDYKGYVGRQNKSR-PDHDDQVLNLQFSWKEMVKPIGSSFIGVSPEFEFALYTVVFLTSQEKMTREVVRVEEYEMQIVVNRHGRYIGTAYPV 283          
BLAST of EY666233 vs. ExPASy Swiss-Prot
Match: PP11_HUMAN (Placental protein 11 OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.058e-16
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   20 EVSGFHNWLQFYLEEAKGNVDYQGYIFPRRRGQIPDSETQLLTVQFEWNDILKSVSTTLVGVSPEFEIALYTLCFFV-GGEDNYVQLGPYPVNIKCY 307
            +V+GFHNW++FYLEE +G VDY  +I+       PD    +L +QF W+   K V +  +G SPEFE ALY+LCF    G+   + LG YP+ ++ Y
Sbjct:  254 KVTGFHNWIRFYLEEKEGLVDYYSHIYDGPWDSYPD----VLAMQFNWDGYYKEVGSAFIGSSPEFEFALYSLCFIARPGKVCQLSLGGYPLAVRTY 346          
The following BLAST results are available for this feature:
BLAST of EY666233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ENDUA_XENLA1.864e-2141.96Poly(U)-specific endoribonuclease-A OS=Xenopus lae... [more]
ENDUB_XENLA7.830e-2039.64Poly(U)-specific endoribonuclease-B OS=Xenopus lae... [more]
ENDOU_XENTR1.023e-1938.39Poly(U)-specific endoribonuclease OS=Xenopus tropi... [more]
PP11_HUMAN1.058e-1643.30Placental protein 11 OS=Homo sapiens PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-015-E12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666233 ID=EY666233; Name=EY666233; organism=Citrus sinensis; type=EST; length=620bp
CCACGCGTCCGGTGAACAAGAAGTCTCTGGCTTCCATAACTGGCTTCAGT
TTTACCTCGAAGAAGCAAAAGGAAATGTTGATTACCAAGGATATATATTC
CCCCGTCGTCGCGGACAAATCCCGGACTCTGAAACGCAGTTGCTAACAGT
TCAGTTTGAATGGAATGACATTCTCAAATCTGTATCAACCACTTTGGTCG
GAGTGAGTCCAGAGTTTGAAATTGCTTTGTACACCCTATGTTTCTTCGTT
GGTGGAGAAGATAACTATGTACAGCTGGGTCCATACCCTGTTAATATCAA
GTGCTATCGATTTGGAGACAGAATTGGTTCCGTCTTTCCCATTGCAGAGA
ATTGAATTTCTGGTTCTTGGTGAAGCCTTGGAGTCTTACTCAAAAAAAGT
TACTGTGTCTAAAAAAGTAGAAATTGTGAGACCATGTAAAATTATGTGCT
AGAAACTGAGGAAAGTTAATAAGTAGACTGTTGTTTTAGGATTTTGCTAT
CTAAGGCTGTAAAATAAAACATGCAGAAACTTATTGTCATATATGATGAT
TGTTATGCTCAGCAGCCCTTTTATATTTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAACAAAAAAAAAAAA
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