EY666225

Overview
NameEY666225
Unique NameEY666225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8095 contig Csv1_Contig8095:102..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY666225 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 9.422e-50
Identity = 107/170 (62.94%), Postives = 124/170 (72.94%), Query Frame = 2
Query:  107 NSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESRGTDGRRXXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWE 604
            NSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  G++GRR                        GVIDEYLERSK NKELND+KRLATSGANFARA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFW+
Sbjct:    5 NSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVDGSNGRRSAMVFLAATLFSTAAVSASANA--GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWK 170          
BLAST of EY666225 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 70/83 (84.34%), Postives = 81/83 (97.59%), Query Frame = 2
Query:  356 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWE 604
            + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAKQKKVPFISDDLE+EC+GK+K+KCGSNVFW+
Sbjct:   29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWK 111          
BLAST of EY666225 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.411e-37
Identity = 70/83 (84.34%), Postives = 79/83 (95.18%), Query Frame = 2
Query:  356 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWE 604
            V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K+KCGSNVFW+
Sbjct:   62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWK 144          
BLAST of EY666225 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 2
Query:  353 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGS 589
            GV+++ L +S ANK LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I++DL++EC+GKD   CGS
Sbjct:   54 GVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132          
The following BLAST results are available for this feature:
BLAST of EY666225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH9.422e-5062.94Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE3.714e-3884.34Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU1.411e-3784.34Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA1.568e-2058.23Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-015-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666225 ID=EY666225; Name=EY666225; organism=Citrus sinensis; type=EST; length=712bp
CCACGCGTCCGCGGACGCGTGGGGTTCTCAACTTCGTGAACTTTGTAAAA
CAAAAAAAAAAAAAAAAAAANATTTGCGCTGCAGCAGGAGCCATGGGCAG
CCATNGAACTCTAGTGTACTCGCATGCAACTATGCCATTTCAGGCAGTGC
TGGATCATCTGAGCTCAATGCAAAGATTGTTTCAGTTTCAACCCCGGCTG
TGCATGGCCACAAAATGCCTGTGATCAGAGCTCAACAAGTTGATGTTTCA
AAAGAATCAAGAGGAACTGATGGAAGGAGAGCTGCCATGGCTCTTCTAGC
AGTTACCCTTTTCACCACAGCTACTGCTGCTGCTTCTTCTTCTGCTAATG
CTGGGGTCATCGATGAATACCTTGAGAGAAGCAAAGCCAACAAGGAATTG
AATGACCAGAAGAGATTGGCAACAAGTGGTGCAAACTTTGCCAGAGCATA
CACTGTTCAATTTGGCACATGCAAGTTCCCTGAGAACTTCACAGGATGCC
AAGATCTTGCCAAGCAAAAGAAAGTGCCATTCATCTCGGATGATTTGGAA
TTGGAGTGCAAAGGGAAAGATAAATACAAGTGTGGTTCCAATGTTTTCTG
GGAAAGGTGAAAGGGGGACAACTGATCTCTTTAAACATTTTATTTTACCC
TCCCAATGAATCTAGTTTCCATTGAAAAACCTTTTACTTGGGCTAAAAAA
AAAAAAAAAAAA
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