CX676150

Overview
NameCX676150
Unique NameCX676150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676150 vs. ExPASy Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 7.996e-72
Identity = 127/202 (62.87%), Postives = 170/202 (84.16%), Query Frame = -1
Query:  328 ESNPWLDVCMAAIEAWGKLNKVEEAEAVFKKMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 933
            ES P+ +  +AAI+A+GKLNKV+EAEA+F+K+ K  ++ S+  Y+ LL+VY DHKMLSKGKDLVK+MAESGC I    WDAL+KL+VE GEVEKADS+L KA +Q+  K M +S+M IMD+Y+KRGD+H+TEKIF +MR+ GY +R +QFQ L+QAYINAK+PAYG+RDR++ADN+FPNK++AAQ+AQ D F+KTA+S++LD
Sbjct:  395 ESKPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKASKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMRDRLKADNIFPNKSMAAQLAQGDPFKKTAISDILD 596          
BLAST of CX676150 vs. ExPASy Swiss-Prot
Match: PPR44_ARATH (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 2.038e-67
Identity = 119/202 (58.91%), Postives = 165/202 (81.68%), Query Frame = -1
Query:  328 ESNPWLDVCMAAIEAWGKLNKVEEAEAVFKKMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 933
            E NP  +  +AAI A+GK++KV++AEAVF+K+ K   ++S+  Y+ LL+VY DHKM+S+GKDLVKQM++SGC+IG L WDA++KL+VE GEVEKA+S L KA Q  + KP+ SS+M +M +Y +RGD+H+TEKIF RM+Q GY +RF  +QTL+QAY+NAK PAYG+++RM+ADN+FPNK LAAQ+A+ D F+KT +S+LLD
Sbjct:  393 EENPRYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLSKAIQSKQIKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAYVNAKAPAYGMKERMKADNIFPNKRLAAQLAKADPFKKTPLSDLLD 594          
BLAST of CX676150 vs. ExPASy Swiss-Prot
Match: PP234_ARATH (Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.743e-62
Identity = 110/202 (54.46%), Postives = 160/202 (79.21%), Query Frame = -1
Query:  328 ESNPWLDVCMAAIEAWGKLNKVEEAEAVFKKMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 933
            + NP  D C++AI+AWGKL +VEEAEAVF+++ + +K      Y AL+++Y ++KML+KG+DLVK+M  +G  IGP  W ALVKL+++ GEV KA+ IL +A + NK +PMF++YM I+++YAKRGD+H+TEK+F +M++  Y A+  Q++T++ AYINAKTPAYG+ +RM+ADNVFPNK+LAA++AQV+ F+K  VS LLD
Sbjct:  408 DQNPRYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKIFPMMPYFALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAELILNRATKDNKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLAYINAKTPAYGMIERMKADNVFPNKSLAAKLAQVNPFKKCPVSVLLD 609          
The following BLAST results are available for this feature:
BLAST of CX676150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PP135_ARATH7.996e-7262.87Pentatricopeptide repeat-containing protein At1g80... [more]
PPR44_ARATH2.038e-6758.91Pentatricopeptide repeat-containing protein At1g15... [more]
PP234_ARATH5.743e-6254.46Pentatricopeptide repeat-containing protein At3g15... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_67E05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-67E05-I9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676150 ID=CX676150; Name=CX676150; organism=Citrus sinensis; type=EST; length=933bp
CTAAAACTAGCAGCTTAACTCTTAAAATCCTTGAAAGCTGCGTTTAGATT
TGCGACCAACAAGAGGGGAAGCCAACTTTTGAAAAATACAAATAAACTAG
GCATGACTATCAGCTCAACTCTTGAAATCCTTGATAGCTGCATTTATATT
TGCGACCAAGAGGGGAAGCCAACTTTTAAGAAAGACAAATAAACTAAGAA
CAACTAGCAGCTTAATTCTTGAAATCCTAGAAGTGTCAATACAAGCAATT
AAAAATGTCTCTCTATAAGACAGATATAGGCTGTGCATAGATAAAGACTT
GGACGTCCAGAATGAGTGAAAGCCTTAGTCAAGCAACTCTGACACCGCTG
TCTTCCTAAATGCATCAACCTGAGCCACTTGTGCTGCTAAAGCCTTGTTT
GGGAATACATTATCTGCTCTCATTCTATCCCTAATTCCATATGCTGGAGT
CTTCGCATTTATATATGCTTGGACTAATGTTTGGAATTGCTTGAATCGAG
CCACATAACCAACCTGCCTCATCCTATGGAAAATCTTTTCTGTGCTATGG
ATATCACCCCGTTTTGCATATTGATCCATGATGAGCATATAAGAACTGAA
CATAGGTTTGAATTTGTTTTGCTGCTGTGCCTTAAGCAGAATAGAGTCAG
CCTTTTCAACCTCTCCTCCTTCCACATGCAGCTTCACGAGAGCATCCCAA
GCCAACGGTCCAATATGACAACCACTTTCTGCCATTTGCTTAACCAAATC
TTTCCCTTTGGATAACATCTTATGATCTGCATAAACCTTCAAGAGTGCAG
TATAATGCTTTGTAGAGAGTTTCTTCCATGTCTTAGACATTTTTTTGAAA
ACTGCCTCCGCTTCCTCGACTTTGTTTAGCTTTCCCCAAGCTTCAATAGC
AGCCATGCACACGTCAAGCCAAGGATTTGATTC
back to top