CX676099

Overview
NameCX676099
Unique NameCX676099
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676099 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 63/215 (29.30%), Postives = 102/215 (47.44%), Query Frame = 3
Query:    3 KIQAIVQMTSPRNLKEMQSLTGRLAALSRFISKATDKCQPFFQVIRRGKKTEWT-PECEEAFRNLKHYLQQAPLLSTPRDGDKLNLYLAVSDRAASSVLVREEEGIQYPIYYTSKALLDAETRYPTMEKWXXXXXXXXRKLRPYF--QAFPVSVITNQPLRQILHKPDASGRLVKWTVELSEFDIDYKPRAAIKAQAMADFVAEFAEPEVCLDQQ 638
            KI+AI +   P   KE+++  G      +FI    D  +P  + +++  K + T PE + AF+ LK+ + + P+L  P    K  L    SD A  +VL ++     +P+ Y S+ L + E  Y T+EK         +  R Y   + F +S   +QPL  +    D + +L +W V+LSEFD D K     K   +AD ++     E  L +Q
Sbjct:  426 KIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQD----GHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEIS-SDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKG-KENCVADALSRIKLEETYLSEQ 634          
BLAST of CX676099 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.663e-12
Identity = 54/223 (24.22%), Postives = 102/223 (45.74%), Query Frame = 3
Query:    6 IQAIVQMTSPRNLKEMQSLTGRLAALSRFISKATDKCQPFFQVIRRGKKTEWTPECEEAFRNLKHYLQQAPLLSTPRDGDKLNLYLAVSDRAASSVL-VREEEGIQYPIYYTSKALLDAETRYPTMEKWXXXXXXXXRKLRPYFQAF--PVSVITNQP--LRQILHKPDASG-RLVKWTVELSE--FDIDYKPRAAIKAQAMADFVAEFAEPEVCLDQQDADI 650
            I  ++Q   P+N KE++   G +  L +FI K +    P   ++++  + +WTP   +A  N+K  L   P+L       K+ L    SD A  +VL  + ++   YP+ Y S  +  A+  Y   +K         +  R Y ++   P  ++T+    + +I ++ +    RL +W + L +  F+I+Y+P +A         + +  EP +  D +D  I
Sbjct:  627 IDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEP-IPKDSEDNSI 848          
BLAST of CX676099 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.663e-12
Identity = 54/223 (24.22%), Postives = 102/223 (45.74%), Query Frame = 3
Query:    6 IQAIVQMTSPRNLKEMQSLTGRLAALSRFISKATDKCQPFFQVIRRGKKTEWTPECEEAFRNLKHYLQQAPLLSTPRDGDKLNLYLAVSDRAASSVL-VREEEGIQYPIYYTSKALLDAETRYPTMEKWXXXXXXXXRKLRPYFQAF--PVSVITNQP--LRQILHKPDASG-RLVKWTVELSE--FDIDYKPRAAIKAQAMADFVAEFAEPEVCLDQQDADI 650
            I  ++Q   P+N KE++   G +  L +FI K +    P   ++++  + +WTP   +A  N+K  L   P+L       K+ L    SD A  +VL  + ++   YP+ Y S  +  A+  Y   +K         +  R Y ++   P  ++T+    + +I ++ +    RL +W + L +  F+I+Y+P +A         + +  EP +  D +D  I
Sbjct:  627 IDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEP-IPKDSEDNSI 848          
BLAST of CX676099 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.663e-12
Identity = 54/223 (24.22%), Postives = 102/223 (45.74%), Query Frame = 3
Query:    6 IQAIVQMTSPRNLKEMQSLTGRLAALSRFISKATDKCQPFFQVIRRGKKTEWTPECEEAFRNLKHYLQQAPLLSTPRDGDKLNLYLAVSDRAASSVL-VREEEGIQYPIYYTSKALLDAETRYPTMEKWXXXXXXXXRKLRPYFQAF--PVSVITNQP--LRQILHKPDASG-RLVKWTVELSE--FDIDYKPRAAIKAQAMADFVAEFAEPEVCLDQQDADI 650
            I  ++Q   P+N KE++   G +  L +FI K +    P   ++++  + +WTP   +A  N+K  L   P+L       K+ L    SD A  +VL  + ++   YP+ Y S  +  A+  Y   +K         +  R Y ++   P  ++T+    + +I ++ +    RL +W + L +  F+I+Y+P +A         + +  EP +  D +D  I
Sbjct:  627 IDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEP-IPKDSEDNSI 848          
The following BLAST results are available for this feature:
BLAST of CX676099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
POL3_DROME7.635e-1729.30Retrovirus-related Pol polyprotein from transposon... [more]
RTF23_SCHPO5.663e-1224.22Retrotransposable element Tf2 155 kDa protein type... [more]
RTF22_SCHPO5.663e-1224.22Retrotransposable element Tf2 155 kDa protein type... [more]
RTF21_SCHPO5.663e-1224.22Retrotransposable element Tf2 155 kDa protein type... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_67B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-67B02-C3-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676099 ID=CX676099; Name=CX676099; organism=Citrus sinensis; type=EST; length=806bp
AGAAGATCCAGGCGATTGTACAAATGACGTCTCCTCGAAACCTGAAGGAG
ATGCAGAGCCTCACGGGGAGGTTGGCGGCGTTGAGCAGATTCATATCCAA
GGCTACAGATAAGTGTCAGCCATTCTTTCAAGTGATAAGGAGGGGAAAGA
AAACGGAATGGACCCCAGAATGCGAGGAAGCCTTCCGGAACTTGAAGCAT
TACTTGCAGCAAGCTCCGCTACTGTCCACACCGAGGGATGGGGACAAGTT
GAATCTGTATTTGGCGGTATCTGATCGGGCCGCCAGTTCCGTTCTAGTGA
GAGAGGAAGAAGGAATTCAGTATCCGATATACTACACCAGCAAGGCCCTG
CTCGACGCTGAGACCAGATACCCAACGATGGAGAAATGGGCACTGGCCCT
TGTGGTTGCTGCTCGGAAGTTGAGGCCGTACTTTCAAGCATTCCCGGTCT
CGGTAATAACCAACCAGCCATTGCGTCAAATTCTGCACAAGCCTGATGCC
TCTGGTCGGCTCGTCAAATGGACTGTAGAGCTGAGCGAATTCGACATAGA
CTATAAACCCCGCGCGGCGATAAAGGCCCAGGCAATGGCCGATTTCGTAG
CTGAGTTCGCGGAGCCCGAAGTATGCTTGGATCAGCAAGATGCAGATATA
GGCAACGACGAAACTCAAGTATGGCAGATATCTGTGGATGGGTCATCAGG
AGAGCGGGGTTCAGGAGCAGGGATTGTCCTGGAAGGCCCAGAGGGGGAGG
AGATCTCTTATGCTGTATAGTTGGAATTTGCAGCCACAAATAACCAGGCA
GAATAT
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