FC921854

Overview
NameFC921854
Unique NameFC921854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length209
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5635 contig Csv1_Contig5635:230..438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921854 vs. ExPASy Swiss-Prot
Match: AROA_ARATH (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Arabidopsis thaliana GN=At2g45300 PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 7.954e-21
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    4 ELSGKLSSQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 207
            +LSG +SSQY            G+VEIEI+DKLISVPYVEMTLKLMERFGV VEHSDSWDRFF++GGQ
Sbjct:  248 KLSGSISSQYLTALLMSAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDRFFVKGGQ 315
[Close]
BLAST of FC921854 vs. ExPASy Swiss-Prot
Match: AROA_BRANA (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.772e-20
Identity = 48/68 (70.59%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    4 ELSGKLSSQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 207
            +LSG +SSQY            G+VEIEIIDKLISVPYVEMTLKLMERFGV  EHSDSWDRFF++GGQ
Sbjct:  244 KLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGVSAEHSDSWDRFFVKGGQ 311
[Close]
BLAST of FC921854 vs. ExPASy Swiss-Prot
Match: AROA_PETHY (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Petunia hybrida PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.948e-20
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    4 ELSGKLSSQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 207
            +LSG +SSQY            G+VEIEIIDKLISVPYVEMTLKLMERFG+ VEHS SWDRFF++GGQ
Sbjct:  244 KLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGISVEHSSSWDRFFVRGGQ 311
[Close]
BLAST of FC921854 vs. ExPASy Swiss-Prot
Match: AROA_SOLLC (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.156e-20
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    4 ELSGKLSSQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 207
            +LSG +SSQY            G+VEIEIIDKLISVPYVEMTLKLMERFGVFVEHS  WDRF ++GGQ
Sbjct:  248 KLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSSGWDRFLVKGGQ 315
[Close]
BLAST of FC921854 vs. ExPASy Swiss-Prot
Match: AROA1_TOBAC (3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic OS=Nicotiana tabacum GN=EPSPS-1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.445e-19
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    4 ELSGKLSSQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 207
            +LSG +SSQY            G+VEIEIIDKLISVPYVEMTLKLMERFGV VEH+ SWD+F ++GGQ
Sbjct:  246 KLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGVSVEHTSSWDKFLVRGGQ 313
[Close]
BLAST of FC921854 vs. ExPASy Swiss-Prot
Match: AROA2_TOBAC (3-phosphoshikimate 1-carboxyvinyltransferase 2 (Fragment) OS=Nicotiana tabacum GN=EPSPS-2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.695e-18
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    4 ELSGKLSSQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 207
            +LSG +SSQY            G+VEIEIIDKLISV YVEMTLKLMERFG+ VEHS SWDRF ++GGQ
Sbjct:   66 KLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVLYVEMTLKLMERFGISVEHSSSWDRFVVRGGQ 133
The following BLAST results are available for this feature:
BLAST of FC921854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AROA_ARATH7.954e-2170.593-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_BRANA1.772e-2070.593-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_PETHY3.948e-2069.123-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_SOLLC5.156e-2069.123-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA1_TOBAC7.445e-1966.183-phosphoshikimate 1-carboxyvinyltransferase 1, ch... [more]
AROA2_TOBAC3.695e-1866.183-phosphoshikimate 1-carboxyvinyltransferase 2 (Fr... [more]
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Properties
Property NameValue
Genbank descriptionC06053B09T7 RindPdigS Citrus sinensis cDNA clone C06053B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921854 ID=FC921854; Name=FC921854; organism=Citrus sinensis; type=EST; length=209bp
GGTGAACTCTCTGGAAAGCTTAGTAGTCAATACTTGACTGCTTTGCTCAT
GGCAGCCCCCTTGGCCCTCGGAAATGTGGAAATTGAAATAATTGATAAAC
TGATTTCCGTTCCTTATGTTGAGATGACTCTGAAGTTGATGGAGCGTTTT
GGGGTCTTTGTAGAGCACAGTGATAGCTGGGATCGGTTCTTCATCCAGGG
GGGTCAAAA
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