CN182848

Overview
NameCN182848
Unique NameCN182848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.737e-38
Identity = 94/227 (41.41%), Postives = 136/227 (59.91%), Query Frame = -2
Query:   90 YIHCDVTKEEDVESAVRLAVSWKG-QLDIMFNNAXXXXXXXXXXS--LNMEDVKF--LLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKA------------------DMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYTT 701
            ++ CDV+ E+DV  AV  A+S  G +LD+  NNA             L+ +  +F  +L VN  G   G+KHAA+AM   +R GSI+  +S AA++GGL  HAY+ SK AI+GL ++ ACEL  HG+RVNC+SP GV + ML+NA+R+    A                  D + E++ ++VR   + L+G +    D+A+A LFLAS+EA +I+ HNLV+DGG TT
Sbjct:  105 FVRCDVSVEDDVRRAVDWALSRHGGRLDVYCNNAGVLGRQTRAARSILSFDAAEFDRVLRVNALGAALGMKHAARAMAP-RRAGSIVSVASVAAVLGGLGPHAYTASKHAIVGLTKNAACELRAHGVRVNCVSPFGVATPMLINAWRQGHDDATADADRDLDLDLDVTVPSDQEVEKMEEVVRGLAT-LKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVTT 329          

HSP 2 Score: 27.7202 bits (60), Expect = 1.737e-38
Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = -1
Query:  682 VIADILDELGAALASTIGGRVHTLRRD 762
            VIADI D  G ALAS +G +V  +R D
Sbjct:   83 VIADIDDAAGEALASALGPQVSFVRCD 109          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.957e-38
Identity = 91/215 (42.33%), Postives = 130/215 (60.47%), Query Frame = -2
Query:   69 AAGYIHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXS-LNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYTTGTSSMSF 710
            A+ Y+HCDVT E DV +AV  AV+  G+LD+MFNNA          S    ED + +L+VNL G   G KHAA+ M    R+GSII T+S ++ + G ASHAY+ SK A++G   + A ELG+HGIRVNC+SP GV + +     R  +G   M  E +  ++ +S +L    +   +D+A AALFLAS++  +++  NL +DGG +   SS  F
Sbjct:   65 ASSYVHCDVTNEGDVAAAVDHAVARFGKLDVMFNNAGVSGPPCFRMSECTKEDFERVLAVNLVGPFLGTKHAARVMAPA-RRGSIISTASLSSSVSGAASHAYTTSKHALVGFTENAAGELGRHGIRVNCVSPAGVATPLA----RAAMG---MDDEAIEAIMANSANLKGAGALKADDIAAAALFLASDDGRYVSGQNLRVDGGLSVVNSSFGF 271          

HSP 2 Score: 26.5646 bits (57), Expect = 2.957e-38
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = -1
Query:  709 VIADILDELGAALASTIG 762
            V+ADI DELGA+L + +G
Sbjct:   45 VVADIQDELGASLVAELG 62          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: ABA2_ARATH (Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.231e-31
Identity = 78/209 (37.32%), Postives = 124/209 (59.33%), Query Frame = -2
Query:   93 AGYIHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXS-LNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRD---SGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYT 707
            A +IH DV  E+D+ +AV  AV   G LDI+ NNA             ++ + +    VN+ G    +KHAA+ MI  ++KGSI+   S   ++GG+  H+Y  SK A++GL RS A ELG+HGIRVNC+SP+ V +++ +    +     + + E+     R+   + + L+G   +++DVA A LFLAS+++ +I+  NL+IDGG+T
Sbjct:   73 AFFIHGDVRVEDDISNAVDFAVKNFGTLDILINNAGLCGAPCPDIRNYSLSEFEMTFDVNVKGAFLSMKHAARVMIP-EKKGSIVSLCSVGGVVGGVGPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLALAHLPE-----EERTEDAFVGFRNFAAANANLKGVELTVDDVANAVLFLASDDSRYISGDNLMIDGGFT 275          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: LINC_PSEPA (2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase OS=Pseudomonas paucimobilis GN=linC PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.578e-25
Identity = 70/205 (34.15%), Postives = 104/205 (50.73%), Query Frame = -2
Query:   93 AGYIHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYT 707
            A Y  CD+ +EEDV++ V   ++  G LD  FNNA           +++E  +  + +N+ G    +K+   AMIE   KGSI+ T+S+A ++G      Y  +K A++GL R  A + GKHGIRVN + P  V + ML  A        D   E     +        GR +   + AQAA++L S+ A F+T   L  DGG+T
Sbjct:   54 AAYFRCDIAQEEDVKALVAQTLAAFGGLDGSFNNAAIPQAGLPLAEVSLERFRQSMDINVTGTFLCMKYQILAMIERGTKGSIVNTASAAGVVGVPMHGEYVGAKHAVVGLTRVAAADYGKHGIRVNALVPGAVRTPMLQRAMDN-----DAGLEPYLNSIHPI-----GRFSEPHEQAQAAVWLLSDAASFVTGSCLAADGGFT 248          

HSP 2 Score: 26.1794 bits (56), Expect = 4.578e-25
Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = -1
Query:  682 IADILDELGAALASTIGGRVHTLRRD 759
            +ADI DE G A+ +T GG+    R D
Sbjct:   35 VADINDEAGEAVVATSGGKAAYFRCD 60          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: HSD_MYCTU (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium tuberculosis GN=fabG3 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.227e-21
Identity = 74/214 (34.58%), Postives = 106/214 (49.53%), Query Frame = -2
Query:   69 AAGYIHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYTTGTSSMSF 710
            AA Y+H DVT+     +AV  AV+  G L ++ NNA             + + + +L VNL G+  GI+   K M E  R GSII  SS   + G +A H Y+ +K A+ GL +STA ELG  GIRVN I P  V + M            D  PE++ +          GR+A   +V+   ++LAS+E+ + T    V+DGG   G +   F
Sbjct:   54 AARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYA-LTEWQRILDVNLTGVFLGIRAVVKPMKEAGR-GSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPM-----------TDWVPEDIFQTA-------LGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHNDF 247          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: HSD_MYCBO (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium bovis GN=fabG3 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.227e-21
Identity = 74/214 (34.58%), Postives = 106/214 (49.53%), Query Frame = -2
Query:   69 AAGYIHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYTTGTSSMSF 710
            AA Y+H DVT+     +AV  AV+  G L ++ NNA             + + + +L VNL G+  GI+   K M E  R GSII  SS   + G +A H Y+ +K A+ GL +STA ELG  GIRVN I P  V + M            D  PE++ +          GR+A   +V+   ++LAS+E+ + T    V+DGG   G +   F
Sbjct:   54 AARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYA-LTEWQRILDVNLTGVFLGIRAVVKPMKEAGR-GSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPM-----------TDWVPEDIFQTA-------LGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHNDF 247          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: LIMC_RHOER ((-)-trans-carveol dehydrogenase OS=Rhodococcus erythropolis GN=limC PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.088e-21
Identity = 67/204 (32.84%), Postives = 101/204 (49.51%), Query Frame = -2
Query:   93 IHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVN--AYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYT 698
            IH DV   E + + V  AVS  G+LDI+  NA           +     + ++ +NL G+ H  K A   ++ G+R GSI+ TSS+A + G      YS +K  ++GL RS A EL  H +RVN + P  V + M+ N   YR +    +    E  ++   + + L        DV+ A LFL SE+A +IT   + +D G T
Sbjct:   72 IHADVRDLESLTAEVDRAVSTLGRLDIVSANAGIASVPFLSHDIPDNTWRQMIDINLTGVWHTAKVAVPHILAGERGGSIVLTSSAAGLKGYAQISHYSAAKHGVVGLMRSLALELAPHRVRVNSLHPTQVNTPMIQNEGTYRIFSPDLENPTREDFEIASTTTNALPIPWVESVDVSNALLFLVSEDARYITGAAIPVDAGTT 275          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.731e-20
Identity = 66/203 (32.51%), Postives = 104/203 (51.23%), Query Frame = -2
Query:   93 YIHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYT 701
            ++H D+T E   ++A+R AV   G LD++ NNA           + + +   +L+VNL G+    KHA K M++   KG+II T S   ++      AY+ SK  ++ L RS A +  KH IRVNC+ P  + + +     + +L   +   EE+ K       LL  R    E++A   LFLAS+ + ++T   +  DGGYT
Sbjct:   56 FVHTDITDEPACQNAIRSAVDKFGGLDVLINNAGIEIVAPIHE-MELSNWNKVLNVNLTGMFLMSKHALKYMLKSG-KGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPL---NEKSFLENNEGTLEEIKKEKAKVNPLL--RLGKPEEIANVMLFLASDLSSYMTGSAITADGGYT 251          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: CBR4_XENLA (Carbonyl reductase family member 4 OS=Xenopus laevis GN=cbr4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.959e-19
Identity = 66/200 (33.00%), Postives = 104/200 (52.00%), Query Frame = -2
Query:   99 IHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGG 698
            + CDV+KE +++   +   +  G +D + N+A          + + ED+  LLS+NL G +   K A K MI+ Q+ GSI+   S     G +    Y  SKE +IG ++S A E+ K  IRVN ++P  + ++M           +D+K + + KM+        GR    E+VAQ+ LFL   E+ +IT H LV+DGG
Sbjct:   52 LSCDVSKENEIQCTFKEIKNNLGNIDYLVNSAGISRDALLLRTRS-EDIMSLLSINLVGTIQTCKVALKGMIQ-QQGGSIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIRTDM----------TSDLKEDSLNKMIP------LGRFGEPEEVAQSVLFLL--ESPYITGHVLVVDGG 231          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: CBR4_XENTR (Carbonyl reductase family member 4 OS=Xenopus tropicalis GN=cbr4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.720e-19
Identity = 64/200 (32.00%), Postives = 105/200 (52.50%), Query Frame = -2
Query:   99 IHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGG 698
            + CDV+KE +++   +   +  G +D + N+A          + + ED++ LLSVNL G +   K A ++MI+ Q+ G+I+   S     G +    Y  SKE +IG ++S A E+ K  IRVN ++P  + ++M +           ++ + + KMV        GR    E+VAQ+ LFL   E+ +IT H LV+DGG
Sbjct:   52 LSCDVSKENEIQDTFKEITNNLGNVDYLVNSAGIRRDALLLRTRS-EDIRSLLSVNLVGTIQTCKLALRSMIQ-QQGGAIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIHTDMTLG----------LEEDSLTKMVP------LGRFGDPEEVAQSVLFLL--ESPYITGHVLVVDGG 231          
The following BLAST results are available for this feature:
BLAST of CN182848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TS2_MAIZE1.737e-3841.41Sex determination protein tasselseed-2 OS=Zea mays... [more]
MOMAS_ORYSJ2.957e-3842.33Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
ABA2_ARATH2.231e-3137.32Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN... [more]
LINC_PSEPA4.578e-2534.152,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydroge... [more]
HSD_MYCTU1.227e-2134.583-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
HSD_MYCBO1.227e-2134.583-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
LIMC_RHOER6.088e-2132.84(-)-trans-carveol dehydrogenase OS=Rhodococcus ery... [more]
BACC2_BACSU6.731e-2032.51Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
CBR4_XENLA1.959e-1933.00Carbonyl reductase family member 4 OS=Xenopus laev... [more]
CBR4_XENTR9.720e-1932.00Carbonyl reductase family member 4 OS=Xenopus trop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0003B20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0003B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182848 ID=CN182848; Name=CN182848; organism=Citrus sinensis; type=EST; length=762bp
CTTGCTGGTAATAGAAAATCATATGCTCTCATTTTTTATGTTCCCATACT
CAAGAACTATTGGTAGATAAAACTCATGCTACTGGTACCTGTAGTATAAC
CTCCATCAATAACAAGATTGTGTGCTGTTATAAATCCAGCTTCTTCACTT
GCTAGAAACAGCGCAGCTTGTGCCACATCTTCTATGCTTGCACTCCTCCC
ACGCAGCAAACTTCCACTGTCTCGCACCATCTTGCACACTTCTTCAGGTT
TCATATCAGCTTTCCCCAGGTACTTTCTGTAGGCATTCACAAGCATCTCT
GAAGGAACTCCATGAGGCGAGATGCAGTTCACTCGAATTCCATGCTTGCC
CAGCTCGCAGGCTGTGCTTCTTGCCAAGCCAATGATTGCCTCTTTTGACA
ACGAATAGGCATGGGATGCAAGGCCACCCATGATGGCTGCAGAGCTAGAA
GTGCAGATAATACTGCCTTTTCTCTGGCCTTCGATCATGGCCTTCGCCGC
ATGCTTGATTCCATGTAATATGCCATTCAGATTAACTGAGAGAAGAAACT
TCACATCTTCCATGTTAAGGCTTGTGATGCTGCCTCCAGAGCCAGAAATT
CCAGCATTGTTGAACATTATGTCTAACTGGCCTTTCCAGGAAACTGCAAG
CCGGACAGCTGATTCAACATCTTCTTCCTTTGTCACGTCGCAATGTATGT
ACCCGGCCGCCTATTGTGCTGGCTAGAGCAGCGCCGAGTTCATCAAGAAT
GTCTGCTATGAC
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