EY666171

Overview
NameEY666171
Unique NameEY666171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666171 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 3.950e-112
Identity = 191/209 (91.39%), Postives = 203/209 (97.13%), Query Frame = 2
Query:   41 DKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKSILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQNWH*NV 667
            DKSFGRDI+DAHYKACLYAGINISGTNGEVMPGQWE+QVGPSVGI+AGDHIWC+RYLLERITEQAGVVL+LDPKPI+GDWNGAGCHTNYSTKSMREEGG+E IKK+ILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVA+RGCSIRVGR+TEK+GKGYLEDRRPASNMDPYVVT LLAETT+LWEPTLEAEALAAQ    NV
Sbjct:  224 DKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHIWCARYLLERITEQAGVVLTLDPKPIDGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVADRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTGLLAETTLLWEPTLEAEALAAQKLSLNV 432          
BLAST of EY666171 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 3.344e-111
Identity = 189/209 (90.43%), Postives = 201/209 (96.17%), Query Frame = 2
Query:   41 DKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKSILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQNWH*NV 667
            DK +GRDI+DAHYKACLYAGINISGTNGEVMPGQWE+QVGPSVGIDAGDH+WC+RYLLERITEQAGVVL+LDPKPIEGDWNGAGCHTNYSTKSMREEGG+E IKK+ILNLSLRHKEHISAYGEGNERRLTGKHETASID FSWGVANRGCSIRVGR+TE +GKGYLEDRRPASNMDPY+VTSLLAETT+LWEPTLEAEALAAQ    NV
Sbjct:  222 DKIWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIDAGDHVWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEPTLEAEALAAQKLSLNV 430          
BLAST of EY666171 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 1.271e-110
Identity = 188/203 (92.61%), Postives = 200/203 (98.52%), Query Frame = 2
Query:   41 DKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKSILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQ 649
            DKSFGRDI+DAHYKACL+AGINISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMRE+GG+E IKK+ILNLSLRHKEHISAYGEGNERRLTGKHETASI++FSWGVANRGCSIRVGR+TEK GKGYLEDRRPASNMDPYVVTSLLAE+T+LWEPTLEAEALAAQ
Sbjct:  221 DKSFGRDISDAHYKACLFAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTSLLAESTLLWEPTLEAEALAAQ 423          
BLAST of EY666171 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 2.831e-110
Identity = 185/203 (91.13%), Postives = 200/203 (98.52%), Query Frame = 2
Query:   41 DKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKSILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQ 649
            +KS+GRDI+DAHYKACLYAGINISGTNGEVMPGQWE+QVGPSVGI+AGDH+WC+RYLLERITEQAGVVL+LDPKPIEGDWNGAGCHTNYSTKSMRE+GG+E IKK+ILNLSLRH EHISAYGEGNERRLTGKHETASID FSWGVANRGCSIRVGR+TEK+GKGYLEDRRPASNMDPY+VTSLLAETT+LWEPTLEAEALAAQ
Sbjct:  220 EKSWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHVWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHMEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEPTLEAEALAAQ 422          
BLAST of EY666171 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 4.088e-109
Identity = 185/203 (91.13%), Postives = 198/203 (97.54%), Query Frame = 2
Query:   41 DKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKSILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQ 649
            DKSFGRDI+DAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVL+LDPKPIEGDWNGAGCHTNYSTKSMRE+GG+E IKK+ILNLSLRHK HI AYGEGNERRLTGKHETASI++FSWGVANRGCSIRVGR+TEK GKGYLEDRRPASNMDPYVVT+LLAE+T+LWEPTLEAEALAAQ
Sbjct:  220 DKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKVHIEAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEPTLEAEALAAQ 422          
BLAST of EY666171 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 392.889 bits (1008), Expect = 1.189e-108
Identity = 184/203 (90.64%), Postives = 197/203 (97.04%), Query Frame = 2
Query:   41 DKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKSILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQ 649
            DKSFGRDI+DAHYKAC+YAGINISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVL+LDPKPIEGDWNGAGCHTNYSTKSMRE+GG+E IKK+ILNLSLRHK HI AYGEGNERRLTGKHETASI+ FSWGVANRGCSIRVGR+TEK GKGYLEDRRPASNMDPYVVT+LLAE+T+LWEPTLEAEALAAQ
Sbjct:  222 DKSFGRDISDAHYKACIYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKIHIEAYGEGNERRLTGKHETASINDFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEPTLEAEALAAQ 424          
BLAST of EY666171 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.930e-107
Identity = 183/203 (90.15%), Postives = 196/203 (96.55%), Query Frame = 2
Query:   41 DKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKSILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQ 649
            DKSFGRDI+DAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVL+LDPKPI+GDWNGAGCHTNYSTKSMRE+GG+E IKK+ILNLSLRH  HISAYGEGNERRLTG HETASID+FSWGVANRGCSIRVGR+TE +GKGYLEDRRPASNMDPYVVT+LLAETTILWEPTLEAE LAA+
Sbjct:  220 DKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHDLHISAYGEGNERRLTGLHETASIDNFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYVVTALLAETTILWEPTLEAEVLAAK 422          
BLAST of EY666171 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 7.216e-106
Identity = 179/203 (88.18%), Postives = 196/203 (96.55%), Query Frame = 2
Query:   41 DKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKSILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQ 649
            DKSFGRDI+DAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVL+LDPKPI+GDWNGAGCHTNYSTK+MRE+GG+E IK++ILNLSLRH  HISAYGEGNERRLTGKHETASI +FSWGVANRGCSIRVGR+TE +GKGYLEDRRPASNMDPY+VT LLAETTILW+P+LEAEALAA+
Sbjct:  215 DKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKTMREDGGFEEIKRAILNLSLRHDLHISAYGEGNERRLTGKHETASIGTFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTGLLAETTILWQPSLEAEALAAK 417          
BLAST of EY666171 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 380.178 bits (975), Expect = 7.978e-105
Identity = 179/203 (88.18%), Postives = 192/203 (94.58%), Query Frame = 2
Query:   41 DKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKSILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQ 649
            DKSFGRDI+DAHYKACLYAGI ISGTNGEVMPGQWEYQVGPSVGIDAGDHIW SRY+LERITEQAGVVL+LDPKPI+GDWNGAGCHTNYST SMRE+GG++ IKK+ILNLSLRH  HI+AYGEGNERRLTG HETASI  FSWGVANRGCSIRVGR+TE +GKGYLEDRRPASNMDPY VT+LLAETTILWEPTLEAEALAA+
Sbjct:  226 DKSFGRDISDAHYKACLYAGIEISGTNGEVMPGQWEYQVGPSVGIDAGDHIWASRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTLSMREDGGFDVIKKAILNLSLRHDLHIAAYGEGNERRLTGLHETASISDFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYTVTALLAETTILWEPTLEAEALAAK 428          
BLAST of EY666171 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.970e-95
Identity = 156/193 (80.83%), Postives = 180/193 (93.26%), Query Frame = 2
Query:   41 DKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKSILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 619
            DK++GRDI DAHYKACLY+GINISG NGEVMPGQWE+QVGPSVGI A D +WC+R+++ERITE+AGVVLS DPKPIEGDWNGAGCHTNYSTKSMR+EGG+E IKK+I  L LRHKEHISAYGEGNERRLTG+HETA +++FSWGVANRG S+RVGR+TEK+GKGY EDRRPASNMDPY+VTS++AETTILW+P
Sbjct:  165 DKAWGRDIVDAHYKACLYSGINISGINGEVMPGQWEFQVGPSVGISAADELWCARFIMERITEKAGVVLSFDPKPIEGDWNGAGCHTNYSTKSMRKEGGFEVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357          
The following BLAST results are available for this feature:
BLAST of EY666171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_DAUCA3.950e-11291.39Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA2_ARATH3.344e-11190.43Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNA4_PHAVU1.271e-11092.61Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNAC_BRANA2.831e-11091.13Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLNA2_MEDSA4.088e-10991.13Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_PEA1.189e-10890.64Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_ORYSJ2.930e-10790.15Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNAC_MAIZE7.216e-10688.18Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA2_HORVU7.978e-10588.18Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA_PINSY1.970e-9580.83Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-014-H02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666171 ID=EY666171; Name=EY666171; organism=Citrus sinensis; type=EST; length=840bp
GGCAGTACGGTCCCGGAATTCCGGGTCGACCCCGCGTCCGGATAAGTCGT
TTGGCCGTGACATTGCAGATGCTCATTACAAGGCTTGCTTGTATGCTGGC
ATTAACATTAGTGGCACCAACGGGGAGGTTATGCCTGGCCAGTGGGAATA
TCAAGTTGGTCCCAGTGTAGGCATTGATGCTGGAGATCATATATGGTGTT
CGAGATACCTTCTTGAGAGAATCACTGAACAAGCTGGTGTTGTTCTCTCA
CTTGATCCAAAACCAATTGAGGGAGACTGGAATGGTGCTGGATGCCACAC
CAATTACAGTACAAAGAGTATGAGAGAGGAAGGAGGCTATGAAACTATTA
AGAAGTCAATCTTGAATCTGTCCCTTCGCCATAAAGAACACATCAGTGCT
TATGGTGAAGGAAATGAGAGAAGGCTAACAGGAAAGCATGAAACAGCTAG
CATTGACTCATTTTCTTGGGGTGTGGCAAATCGTGGTTGCTCAATCCGTG
TGGGACGTGAAACTGAGAAGCAAGGCAAAGGTTACTTGGAAGATAGGCGT
CCAGCTTCAAACATGGACCCTTATGTAGTGACCTCGTTACTGGCTGAAAC
TACAATATTGTGGGAACCCACACTTGAGGCTGAAGCGCTAGCTGCTCAAA
ATTGGCATTGAAATGTCTGAAGTTGATTATAAACACCTGAAGAACTTGCA
AACCATTCTCCTTGGATTTAATTGCCCCGGGTTTGGGGGAATACTTTTCC
CTTTTCTTTTTAGCTTTAAGGGGAAAAACTTGTTAGATAAAAGGCCCCCA
CCTATAAGGTCCATCGCCCAGTTAACCTGAACCCAAAAAT
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