EY666168

Overview
NameEY666168
Unique NameEY666168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666168 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.085e-51
Identity = 112/208 (53.85%), Postives = 133/208 (63.94%), Query Frame = 2
Query:   92 SSSRAGGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQ-----PEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRRDVKCPEPEKHHVPFQGVGRTLGSS-STAASEPTVDSTPAN 697
            S   AG IRT +DLNR              EYYTGG+KSGM+VQDP K    DVD +F+QA++  AV+ P+E          FTG ARLLSGE V S+PQQ     P+ I+H I FW NGFTVNDGPLR   DPENA+F+ SI +SECP ELEPADK+  VHV+L+RR     EP K   PFQGVGRTLG+S S ++S P   S P N
Sbjct:  128 SRQHAGNIRTFADLNRSPADGEGSDSDEANEYYTGGQKSGMMVQDPKK--VKDVDELFDQARQ-SAVDRPVE--PSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLVRRGENFTEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMN 330          
BLAST of EY666168 vs. ExPASy Swiss-Prot
Match: NSF1C_DICDI (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.514e-21
Identity = 76/233 (32.62%), Postives = 110/233 (47.21%), Query Frame = 2
Query:   32 PRVRKNFQSMAVRDKKPAKPSSSRAGGIRTLSDLNRRS------GPXXXXXXXAPQEYYTGGEKSGMLVQDPSK-----GDPNDVDAIFNQAKELGAV---EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEP----IVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELE-PADKRSSVHVNLI-RRDVKCPEPEK-HHVPFQGVGRTLGSSSTAAS 667
            P  R  +     +      P+  R GGIRTLSD N                    Q+Y+TGGEKSG++V+   K     G  + V+ +F+ AK  GAV   E  +E            G      G    S P++ +P    +   + FW  GFT++DGPLR+ D+PEN   L+ I++   P+EL+  A   + + V LI   +    EP K  +V F G G+TLGSSST+ +
Sbjct:   74 PASRPVYSKPVAKTVSKKAPAGGRVGGIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVNDVFDSAKRHGAVASNEKKVEKPDSFDSVGYQLGATD--QGNRNVSKPKEKDPNSQVVEVKVTFWNQGFTIDDGPLRKYDNPENKELLDDIQRGIVPRELQKKATTPNGLSVTLINNHNQDYVEPAKPKYVAFSGGGQTLGSSSTSTN 304          
BLAST of EY666168 vs. ExPASy Swiss-Prot
Match: UBX1_EMENI (UBX domain-containing protein 1 OS=Emericella nidulans GN=ubx1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.157e-19
Identity = 69/218 (31.65%), Postives = 95/218 (43.58%), Query Frame = 2
Query:   80 PAKPSSSRAGGIR---TLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSA----------PQQPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPA 694
            P + SSSR    +   TL DL   +           Q+++ GGEKSG+ VQ+P       ++              P  +         FTG AR L GE  PS           PQ P  +   + FWA+GF+V+DG L R DDP+NA  L SI++   P  +  A     V V + + D K   P+  + PF G G+ LGS +     P   S PA
Sbjct:   68 PRESSSSRKQPPKKFATLGDLASGAADSSDDDDDENQDFFAGGEKSGLAVQNPDDLKKKIIEKARRTQLPASDDSEPRRNY--------FTGPARTLGGEDTPSRVIDTPSGPAQPQIPRRVRRTLHFWADGFSVDDGELYRSDDPQNAEILNSIRQGRAPLSIMNAQHGQDVDVEIKQHDEKYVRPKPKYQPFAGKGQRLGSPTPGIRAP-APSEPA 276          
BLAST of EY666168 vs. ExPASy Swiss-Prot
Match: UBX1_YEAST (UBX domain-containing protein 1 OS=Saccharomyces cerevisiae GN=SHP1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.051e-14
Identity = 69/229 (30.13%), Postives = 98/229 (42.79%), Query Frame = 2
Query:   77 KPAKPSSSRAGG----IRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDV-DAIFNQAK---ELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQ-----------QPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRR-DVKCPEPEKHHVPFQGVGRTLGSSSTAASEPT---VDSTPA 694
            +P K SS    G      + SD+ R  G         P+  + GGE SG+ V DPS  DPN +   +  +A+   ++GA  G  +          FTG    L G T+ +A +           +PE +   I FW  GF V DGPL R DDP N+ +L  + +   P +L        V VN+ ++ D     P +    F G G+ LGS     S P     + TPA
Sbjct:  110 EPTKGSSRSGSGNNSRFMSFSDMVR--GQADDDDEDQPRNTFAGGETSGLEVTDPS--DPNSLLKDLLEKARRGGQMGAENGFRDDEDHEMGANRFTGRGFRL-GSTIDAADEVVEDNTSQSQRRPEKVTREITFWKEGFQVADGPLYRYDDPANSFYLSELNQGRAPLKLLDVQFGQEVEVNVYKKLDESYKAPTRKLGGFSGQGQRLGSPIPGESSPAEVPKNETPA 333          
BLAST of EY666168 vs. ExPASy Swiss-Prot
Match: NSF1C_PONAB (NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.855e-11
Identity = 58/173 (33.53%), Postives = 82/173 (47.40%), Query Frame = 2
Query:  179 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLL-------SGETVPSAPQQPEPIVHNIV-FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSS 655
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G    L       S        Q     VH ++  W +GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTA 264          
BLAST of EY666168 vs. ExPASy Swiss-Prot
Match: NSF1C_HUMAN (NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.855e-11
Identity = 58/173 (33.53%), Postives = 82/173 (47.40%), Query Frame = 2
Query:  179 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLL-------SGETVPSAPQQPEPIVHNIV-FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSS 655
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G    L       S        Q     VH ++  W +GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTA 264          
BLAST of EY666168 vs. ExPASy Swiss-Prot
Match: NSF1C_RAT (NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 57/178 (32.02%), Postives = 83/178 (46.63%), Query Frame = 2
Query:  179 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIVHN-------------IVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSS 655
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G      G  + +AP++    V               +  W  GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAG-----GGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTA 264          
BLAST of EY666168 vs. ExPASy Swiss-Prot
Match: NSF1C_MOUSE (NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 57/178 (32.02%), Postives = 83/178 (46.63%), Query Frame = 2
Query:  179 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIVHN-------------IVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSS 655
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G      G  + +AP++    V               +  W  GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAG-----GGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTA 264          
BLAST of EY666168 vs. ExPASy Swiss-Prot
Match: NSF1C_BOVIN (NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 57/178 (32.02%), Postives = 83/178 (46.63%), Query Frame = 2
Query:  179 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIVHN-------------IVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSS 655
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G      G  + +AP++    V               +  W  GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKRSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAG-----GGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTA 264          
BLAST of EY666168 vs. ExPASy Swiss-Prot
Match: UBX2B_HUMAN (UBX domain-containing protein 2B OS=Homo sapiens GN=UBXN2B PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 57/199 (28.64%), Postives = 90/199 (45.23%), Query Frame = 2
Query:  125 SDLNRRSGPXXXXXXXAPQEYYTGG-EKSGMLVQDPSKGDPNDVDAIFNQAKELGAVE-GPLEHLXXXXXXXXFTGTARLLSGETVPSAP-----QQPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPAN 697
            S  NR            PQ +Y+   E SG+ +  PS G    V+ +F +A+E GAV                FTG    L       +       Q + +   +  W+NGF+++DG LR  ++P NA FLES+K+ E P EL+       V++++   +D +  +P      F G G+ LGS +     P + STP++
Sbjct:   44 SKSNRPKATVFKSPRTPPQRFYSSEHEYSGLNIVRPSTG--KIVNELFKEAREHGAVPLNEATRASGDDKSKSFTGGGYRLGSSFCKRSEYIYGENQLQDVQILLKLWSNGFSLDDGELRPYNEPTNAQFLESVKRGEIPLELQRLVHGGQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLT-----PEIVSTPSS 235          
The following BLAST results are available for this feature:
BLAST of EY666168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
UBAX1_ARATH4.085e-5153.85UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_DICDI7.514e-2132.62NSFL1 cofactor p47 homolog OS=Dictyostelium discoi... [more]
UBX1_EMENI3.157e-1931.65UBX domain-containing protein 1 OS=Emericella nidu... [more]
UBX1_YEAST1.051e-1430.13UBX domain-containing protein 1 OS=Saccharomyces c... [more]
NSF1C_PONAB1.855e-1133.53NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 ... [more]
NSF1C_HUMAN1.855e-1133.53NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 ... [more]
NSF1C_RAT3.164e-1132.02NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c ... [more]
NSF1C_MOUSE3.164e-1132.02NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 ... [more]
NSF1C_BOVIN3.164e-1132.02NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV... [more]
UBX2B_HUMAN4.133e-1128.64UBX domain-containing protein 2B OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-014-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666168 ID=EY666168; Name=EY666168; organism=Citrus sinensis; type=EST; length=868bp
TGCACGCGGTACGGTCCGGATTCCGGGTCGACCCCGCGTCCGGAAAAACT
TCCAATCCATGGCTGTCCGTGACAAAAAACCAGCAAAACCATCAAGCAGT
CGGGCCGGCGGTATACGCACGCTCTCCGATCTGAACCGGCGGTCGGGACC
CGACTCCGACTCAGACGATGATGCACCTCAAGAGTATTACACTGGTGGCG
AGAAGAGTGGTATGCTTGTCCAAGATCCTTCCAAGGGCGATCCTAATGAT
GTGGATGCGATTTTCAATCAGGCTAAGGAACTGGGAGCTGTAGAAGGGCC
GCTTGAGCATCTCAGTCCATCTTCAAGCTCAAGAAGCTTTACTGGAACTG
CTAGATTACTCTCGGGGGAAACTGTACCGTCTGCACCTCAGCAGCCTGAG
CCCATTGTTCATAACATTGTTTTCTGGGCCAATGGTTTCACTGTTAATGA
TGGTCCCTTGAGGAGGTTGGATGATCCTGAAAATGCATCTTTCTTAGAGA
GCATCAAAAAGTCTGAGTGTCCAAAAGAGCTAGAGCCTGCTGATAAAAGG
TCCTCAGTTCATGTCAATCTGATAAGGAGGGATGTGAAATGCCCTGAACC
AGAGAAGCACCATGTTCCATTTCAGGGTGTTGGAAGAACACTGGGTAGCA
GCAGTACTGCAGCTTCTGAACCCACTGTTGATTCCACCCCGGCCAACACC
TGCTTCCTCCTCTTCTGAGGGTCTGGGTGTTGAATGGAAAACCTTCCGTC
GAAACTCAGTTTCAAACCCGGGTGGGGGACGGGAACCCCGCTGGATACCA
ACTTTCAATCTTTCCCCCCCAAATCGGCGACATTCGTTTCCTTCTTTGGA
TGGCATTTTACGGCCGGG
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