CN182579

Overview
NameCN182579
Unique NameCN182579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN182579 vs. ExPASy Swiss-Prot
Match: BH135_ARATH (Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135 PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.356e-25
Identity = 62/93 (66.67%), Postives = 81/93 (87.10%), Query Frame = -2 
Query:  166 MSSRRSR--QAAGVSRISDDQIIELVSKLRQLLPEIRD-RRPQKVSASKVLQETCNYIRSLHREVDDLSERLSQLLSTIDADSPEAAIIRSLI 435
            MS RRSR  Q++G SRIS+DQI +L+ KL+QLLPE+RD RR  KVSA++VLQ+TCNYIR+LHREVDDLSERLS+LL+  ++D+ +AA+IRSL+
Sbjct:    1 MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA--NSDTAQAALIRSLL 91
The following BLAST results are available for this feature:
BLAST of CN182579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BH135_ARATH5.356e-2566.67Transcription factor bHLH135 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002L03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002L03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182579 ID=CN182579; Name=CN182579; organism=Citrus sinensis; type=EST; length=577bp
TTTTTTTTTTTTTTTAGTGCAGTCCTTTTATTATACAAACTTAATTATAG
TTACAATACATTCTAGTTCTTGTTTGATCTATGTAGTGACCAGAACTTAA
TTAGTAAGATTAAAGTAGAGAAGAACTAGAAAGATAATTAAGTAATTAAG
GCTACAGAATTACATAATTAAACTCCTAATTATCGCAGCTTCGGGACTAT
CAGCATCTATAGTAGATAAAAGCTGGGATAGTCGCTCACTTAGGTCATCA
ACTTCCCTGTGCAAGCTTCTAATATAATTGCAAGTTTCCTGTAGAACCTT
AGAAGCTGAAACCTTTTGTGGGCGTCTATCGCGAATCTCAGGGAGGAGTT
GGCGTAGCTTTGAGACAAGTTCAATGATCTGATCATCACTGATCCTCGAT
ACACCGGCAGCTTGCCTCGACCTTCTGCTAGACATGATGATCCTTGGAGC
TAGCTGCTGACTTGCTTTGTATATATTAATGTAAATGAGCTAATTAAAAG
GCACTTGCAATATTCACTTGGGAAAAATAAAAAAGAAAGATACTGAAGGC
CGAAGGGGTTGCGCAGAATGAACTCCT
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