CN182573

Overview
NameCN182573
Unique NameCN182573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182573 vs. ExPASy Swiss-Prot
Match: PER56_ARATH (Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.219e-49
Identity = 100/180 (55.56%), Postives = 122/180 (67.78%), Query Frame = -2
Query:  251 RRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQD--KFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 784
            RRDG V+   EA L LPSPF N S L   F  KGL  KDLVVLSGGHTIG  HC   +NRLYNFTG GD DP+LD  YA  L+ KCK   DTTT  E+DPGSF+ FD  Y+ ++ + +GLFQSDAALL N+  ++ V++  N D   FF +F  SM +MG + VLTG  GE+RKKC ++N
Sbjct:  151 RRDGLVTNITEALLNLPSPFNNISSLITQFQSKGLDKKDLVVLSGGHTIGNGHCPQITNRLYNFTGKGDSDPNLDTEYAVKLRGKCKP-TDTTTALEMDPGSFKTFDESYFKLVSQRRGLFQSDAALLDNQETKSYVLKSLNSDGSTFFKDFGVSMVKMGRIGVLTGQVGEVRKKCRMVN 329          
BLAST of CN182573 vs. ExPASy Swiss-Prot
Match: PER39_ARATH (Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.173e-47
Identity = 97/181 (53.59%), Postives = 126/181 (69.61%), Query Frame = -2
Query:  251 RRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKT-KCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELR--NQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 784
            RRDG +S  AEA   +P PF NF+ L   F ++GL VKDLV+LSG HTIGVSHC+ FSNRL+NFTG GDQDPSLD  YA  LK+ +C S+AD TT  E+DPGS   FD  YY ++++ +GLF+SDAAL  N  A   V      ++ +FF EF+ SM++MG + V TG+ GEIR+ C+ +N
Sbjct:  146 RRDGRISNFAEAMNNIPPPFGNFTTLITLFGNQGLDVKDLVLLSGAHTIGVSHCSSFSNRLFNFTGVGDQDPSLDSEYADNLKSRRCLSIADNTTKVEMDPGSRNTFDLSYYRLVLKRRGLFESDAALTMNPAALAQVKRFAGGSEQEFFAEFSNSMEKMGRIGVKTGSDGEIRRTCAFVN 326          
BLAST of CN182573 vs. ExPASy Swiss-Prot
Match: PER3_ARATH (Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.152e-46
Identity = 95/182 (52.20%), Postives = 130/182 (71.43%), Query Frame = -2
Query:  248 RRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKT-KCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMEL--RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 784
            RRDG +S AAEA   +P P +N + L+  F ++GL +KDLV+LSG HTIGVSHC+ F+NRLYNFTG G QDP+LD  YAA LK+ KC SL D  T  E+DPGS + FD  YY ++++ +GLFQSD+AL TN    + +  +   +   FF+EFA+SM++MG +NV TG+ G +R++CSV N+
Sbjct:  145 RRDGRISNAAEALANIPPPTSNITNLQTLFANQGLDLKDLVLLSGAHTIGVSHCSSFTNRLYNFTGRGGQDPALDSEYAANLKSRKCPSLNDNKTIVEMDPGSRKTFDLSYYQLVLKRRGLFQSDSALTTNPTTLSNINRILTGSVGSFFSEFAKSMEKMGRINVKTGSAGVVRRQCSVANS 326          
BLAST of CN182573 vs. ExPASy Swiss-Prot
Match: PER27_ARATH (Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.567e-46
Identity = 98/180 (54.44%), Postives = 118/180 (65.56%), Query Frame = -2
Query:  251 RRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVME--LRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 784
            RRDG VS   E +L  PSPF N ++L  +F  KGL  KDLV+LSGGHTIG+ HC   +NRLYNFTG GD DPSLD  YAA L+ KCK   DTTT  E+DPGSF+ FD  Y+ ++ + +GLFQSDAALL N   R  V++    +   FF +F  SM +MG   VLTG  GEIRK C   N
Sbjct:  145 RRDGRVSNINEVNL--PSPFDNITKLISDFRSKGLNEKDLVILSGGHTIGMGHCPLLTNRLYNFTGKGDSDPSLDSEYAAKLRKKCKP-TDTTTALEMDPGSFKTFDLSYFTLVAKRRGLFQSDAALLDNSKTRAYVLQQIRTHGSMFFNDFGVSMVKMGRTGVLTGKAGEIRKTCRSAN 321          
BLAST of CN182573 vs. ExPASy Swiss-Prot
Match: PER1_ORYSJ (Peroxidase 1 OS=Oryza sativa subsp. japonica GN=PRX74 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 3.353e-46
Identity = 101/184 (54.89%), Postives = 125/184 (67.93%), Query Frame = -2
Query:  251 RRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTG---NGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRN---QDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 784
            RRDG VSIA E D L P P ANF+EL + F  K L +KDLVVLS GHTIG SHC  F++RLYNFTG     D DP+L+ +Y A L++KC SL D TT  E+DPGSF+ FD  Y+  + + +GLF SD  LLTN   R  V        +D+FF +FA SM +MG + VLTG+QGEIRKKC+V+N
Sbjct:  144 RRDGRVSIANETDQL-PPPTANFTELTQMFAAKNLDLKDLVVLSAGHTIGTSHCFSFTDRLYNFTGLDNAHDIDPTLELQYMARLRSKCTSLQDNTTLVEMDPGSFKTFDLGYFKNVAKRRGLFHSDGELLTNGFTRAYVQRHAGGGYKDEFFADFAASMVKMGGVEVLTGSQGEIRKKCNVVN 326          
BLAST of CN182573 vs. ExPASy Swiss-Prot
Match: PER30_ARATH (Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.707e-45
Identity = 93/179 (51.96%), Postives = 125/179 (69.83%), Query Frame = -2
Query:  257 RRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLK-TKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRN--QDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSV 784
            RRDG +S   EA   +P P +NF+ L++ F ++GL +KDLV+LSG HTIGVSHC+  + RLYNF+    QDPSLD +YAA LK  KCKSL D +T  E+DPGS R FD  YY ++++ +GLFQSD+AL TN     ++ +L N  + KFF  FA+SM++MG + V TG+ G IR +CSV
Sbjct:  148 RRDGRISNKTEATNNIPPPTSNFTTLQRLFKNQGLNLKDLVLLSGAHTIGVSHCSSMNTRLYNFSTTVKQDPSLDSQYAANLKANKCKSLNDNSTILEMDPGSSRSFDLSYYRLVLKRRGLFQSDSALTTNSATLKVINDLVNGSEKKFFKAFAKSMEKMGRVKVKTGSAGVIRTRCSV 326          
BLAST of CN182573 vs. ExPASy Swiss-Prot
Match: PER1_ARATH (Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.249e-42
Identity = 89/182 (48.90%), Postives = 117/182 (64.29%), Query Frame = -2
Query:  251 RRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFFT----EFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 784
            RRDG +S   +A L LPSPFA+   LKKNF +KGL  KDLVVLSGGHTIG+S C   ++RLYNFTG GD DPS++P Y   LK KC    D  T+  +DPGS   FD+HY+ ++ + KGLF SD+ LL +   +N V         F+    +F+ SM ++G + +LTG  GEIRK+C+  N
Sbjct:  145 RRDGRISKLNDALLNLPSPFADIKTLKKNFANKGLNAKDLVVLSGGHTIGISSCALVNSRLYNFTGKGDSDPSMNPSYVRELKRKCPP-TDFRTSLNMDPGSALTFDTHYFKVVAQKKGLFTSDSTLLDDIETKNYVQTQAILPPVFSSFNKDFSDSMVKLGFVQILTGKNGEIRKRCAFPN 325          
BLAST of CN182573 vs. ExPASy Swiss-Prot
Match: PER24_ARATH (Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.365e-39
Identity = 93/183 (50.82%), Postives = 119/183 (65.03%), Query Frame = -2
Query:  251 RRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKC--KSL-ADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFFTEFAQSMKRMGAMNVLT-GTQ-GEIRKKCSVIN 784
            R DG VS+A EA   LPS  ANF+ L+K F +  L V DLV LSG HTIG++HC  F  RL NFTG GD DPSL+P YA+FLK++C  KSL  + +    +DP     FDS Y+  L++NKGLF SDAALLT+  A +I    +N   F  +F +SM +M ++ VLT G Q GEIRK C ++N
Sbjct:  168 RVDGRVSLATEAARDLPSAGANFTTLQKLFAESDLDVVDLVALSGAHTIGIAHCGVFGRRLLNFTGKGDTDPSLNPSYASFLKSECSDKSLRLNPSAVVGMDPTGPLAFDSGYFVSLLKNKGLFTSDAALLTDPSAAHIASVFQNSGAFLAQFGRSMIKMSSIKVLTLGDQGGEIRKNCRLVN 350          
BLAST of CN182573 vs. ExPASy Swiss-Prot
Match: PER5_VITVI (Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.366e-36
Identity = 82/181 (45.30%), Postives = 111/181 (61.33%), Query Frame = -2
Query:  248 RRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKC-KSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN-KGARNIVMELRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 784
            RRDG +S+A+EA   LP P     +L + F++KGLT  ++V LSG HTIG SHC+ FSNRLYNF G   QDP+LDP+YAA LKT+C +   +T     ++P S    D  YY  ++ N+GLF SD  LLT+   A  +     N   +  +FA +M +MG + VL G  G+IR  C VIN+
Sbjct:  182 RRDGRISLASEASTNLPPPTFTVDQLTQFFSNKGLTQDEMVTLSGAHTIGRSHCSSFSNRLYNFNGTSGQDPTLDPQYAASLKTQCPQGSTNTNLVVPMNPSSPSITDVGYYVDVLRNRGLFTSDQTLLTDTTTATQVRQNAGNPFLWKNKFASAMVKMGQLGVLIGEAGQIRANCRVINS 362          
BLAST of CN182573 vs. ExPASy Swiss-Prot
Match: PER14_ARATH (Peroxidase 14 OS=Arabidopsis thaliana GN=PER14 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.726e-34
Identity = 79/181 (43.65%), Postives = 112/181 (61.88%), Query Frame = -2
Query:  248 RRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALL-TNKGARNIVME-LRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 784
            RRD + +  A+ +  LP P   F  +   F+++GL + DLV LSG HTIG S CT F  RLYN +G+G  D +L+  YAA L+ +C         +ELD  S  +FD+ Y+  LIEN GL  SD  L  +N+ +R +V +   +Q++FF +FA+SM +MG ++ LTG+ GEIRKKC  INN
Sbjct:  156 RRDSATASRAKPNKDLPEPDNLFDTIFLRFSNEGLNLTDLVALSGSHTIGFSRCTSFRQRLYNQSGSGSPDTTLEKSYAAILRQRCPRSGGDQNLSELDINSAGRFDNSYFKNLIENMGLLNSDQVLFSSNEQSRELVKKYAEDQEEFFEQFAESMIKMGKISPLTGSSGEIRKKCRKINN 336          
The following BLAST results are available for this feature:
BLAST of CN182573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER56_ARATH7.219e-4955.56Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=... [more]
PER39_ARATH5.173e-4753.59Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=... [more]
PER3_ARATH1.152e-4652.20Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 ... [more]
PER27_ARATH2.567e-4654.44Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=... [more]
PER1_ORYSJ3.353e-4654.89Peroxidase 1 OS=Oryza sativa subsp. japonica GN=PR... [more]
PER30_ARATH3.707e-4551.96Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=... [more]
PER1_ARATH2.249e-4248.90Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=... [more]
PER24_ARATH1.365e-3950.82Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=... [more]
PER5_VITVI5.366e-3645.30Peroxidase 5 OS=Vitis vinifera GN=GSVIVT0003715900... [more]
PER14_ARATH1.726e-3443.65Peroxidase 14 OS=Arabidopsis thaliana GN=PER14 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002K24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182573 ID=CN182573; Name=CN182573; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTTTTTTTTTTATTGGAAAGCAACCCAGTCAAATTAATTCGATA
AGAAAGGTAGCTGGTAGTTATAAACGTACAGCCTATCAATGATACAAATT
AAGGCTTCAGCTGCACAAACACACCCACATCCTTAATTTATTCCGTGGTA
CAATTATCAACAGATCTTAACAAACCCACAAGCCCAGCAGCAGACTAAAT
TGGCAATTACATTGACATCAGATAGATGAATGCAACAAACTATCTGGATT
ATTAATAACACTGCACTTCTTTCGAATCTCCCCTTGAGTGCCAGTGAGAA
CATTCATAGCTCCCATTCTCTTCATTGACTGAGCAAACTCGGTGAAGAAC
TTATCTTGGTTTCTCAACTCCATGACAATGTTTCTTGCTCCCTTATTGGT
TAAAAGAGCAGCATCAGATTGGAATAGACCCTTGTTCTCGATAAGAATAT
CATAGTAATGGCTGTCGAATTTTCGAAAACTCCCCGGGTCCAATTCGGCA
GTAGTCGTTGTGTCGGCAAGGCTCTTGCATTTGGTTTTTAAGAATGCAGC
GTATCGTGGGTCCAATGAAGGATCTTGATCTCCATTTCCTGTGAAATTGT
AGAGCCTGTTGCTGAAGAAGGTGCAGTGCGAAACTCCGATTGTGTGGCCA
CCTGAAAGGACTACAAGATCTTTGACAGTGAGACCTTTGTCGTTAAAATT
TTTCTTGAGTTCACTGAAGTTGGCAAAAGGTGAAGGAAGCAGCAGATCGG
CCTCAGCAGCTATGGACACACTGCCATCTCTTCTA
back to top