CN182558

Overview
NameCN182558
Unique NameCN182558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.280e-67
Identity = 110/129 (85.27%), Postives = 121/129 (93.80%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 387
            +DVPIRVFKNSKD+GV+FPFNQPMKIYSSLWNADDWATRGGLEKT+W KAPF+ASY+GFHVDGCE SVNAKFCETQGKRWWDQK FQDLDA QY+RL+WVR++YTIYNYC DR RFP P PEC+RDRDI
Sbjct:  165 DDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWEKAPFVASYRGFHVDGCEASVNAKFCETQGKRWWDQKEFQDLDANQYKRLKWVRKRYTIYNYCTDRVRFPVPPPECRRDRDI 293          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 5.035e-64
Identity = 109/130 (83.85%), Postives = 120/130 (92.31%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPS-PECKRDRDI 387
            ++VPIRVFKNSKDLGV+FPF+QPMKIY+SLWNADDWATRGGLEKTDWSKAPFIA+YKGFH+DGCE SVNAKFC+TQGKRWWDQ  F+DLDA Q+RRLRWVRQKYTIYNYC D  R+P  S PECKRDRDI
Sbjct:  166 DEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDTKRYPHISPPECKRDRDI 295          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.763e-62
Identity = 104/129 (80.62%), Postives = 114/129 (88.37%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 387
            +D PIRVFKNS DLGV+FPFNQPMKIY+SLWNADDWATRGGLEKTDWSKAPFIASYKGFH+DGCE SVNAKFC+TQGKRWWDQ  F+DLDA Q+++L WVR KYTIYNYC DR R+    PEC RDRDI
Sbjct:  164 DDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWQKLAWVRNKYTIYNYCTDRKRYSQVPPECTRDRDI 292          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.608e-62
Identity = 99/129 (76.74%), Postives = 118/129 (91.47%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 387
            +++PIRVFKN K+LGV+FPFNQPMK+Y+SLWNADDWATRGGLEKTDWSKAPF+A YKGFHVDGCE SVN++FC TQGKRWWDQ  F+DLD++Q+RRL+WVRQK+TIYNYC DR R+P   PEC+R+RDI
Sbjct:  165 DNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYKGFHVDGCEASVNSRFCATQGKRWWDQTEFRDLDSFQWRRLKWVRQKFTIYNYCTDRTRYPQLPPECRRNRDI 293          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.980e-60
Identity = 100/129 (77.52%), Postives = 112/129 (86.82%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 387
            +D PIRVFKNSKDLGVR+PF+QPMK+YSSLWNADDWATRGG EKTDWSKAPF+ASY+GFHVDGCE S  AKFC TQG RWWDQ  FQDLDA QYRRL WVR+++TIYNYC D  R+   +PECKRDRD+
Sbjct:  165 DDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEAKFCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDHDRYAAMAPECKRDRDV 293          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.586e-60
Identity = 97/129 (75.19%), Postives = 114/129 (88.37%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 387
            +++PIRVFKN+KDLGVRFPFNQPMK+YSSLWNADDWATRGGLEKT+W+ APFIASY+GFH+DGC+ SV AK+C TQG+ WWDQ  F+DLDA QYRRL+WVR K+TIYNYC DR RFP    EC+RDRD+
Sbjct:  167 DNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIASYRGFHIDGCQASVEAKYCATQGRMWWDQNEFRDLDAEQYRRLKWVRMKWTIYNYCTDRTRFPVMPAECRRDRDV 295          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.411e-60
Identity = 97/128 (75.78%), Postives = 113/128 (88.28%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRD 384
            +++PIR FKN+KDLGVRFPFNQPMK+YSSLWNADDWATRGGLEKT+W+ APF+ASYKGFH+DGC+ SV AK+C TQG+ WWDQK F+DLDA Q+RRL+WVR K+TIYNYC DR RFP    ECKRDRD
Sbjct:  168 DNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVASYKGFHIDGCQASVEAKYCATQGRMWWDQKEFRDLDAEQWRRLKWVRMKWTIYNYCTDRTRFPVMPAECKRDRD 295          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 7.524e-60
Identity = 103/131 (78.63%), Postives = 111/131 (84.73%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSV--NAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 387
            +DVPIR FKNSKDLGV+FPFNQPMKIYSSLW+ADDWATRGGLEKTDWS APF ASY  FHVDGCE +     + C T+G RWWDQKAFQDLDA QYRRLRWVRQKYTIYNYC DR R+PT  PEC +DRDI
Sbjct:  165 DDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSNAPFTASYTSFHVDGCEAATPQEVQVCNTKGMRWWDQKAFQDLDALQYRRLRWVRQKYTIYNYCTDRKRYPTLPPECTKDRDI 295          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.859e-59
Identity = 99/131 (75.57%), Postives = 112/131 (85.50%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSV--NAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 387
            +DVPIR FKNSKDLGV+FPFNQPMKIYSSLW+ADDWATRGGLEKT+W+ APF ASY  FHVDGCE +     + C T+G +WWDQKAFQDLDA QYRRLRWVRQKYT+YNYC D+AR+P P PEC +DRDI
Sbjct:  166 DDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASYTSFHVDGCEAATPQEVQVCNTKGMKWWDQKAFQDLDALQYRRLRWVRQKYTVYNYCTDKARYPVPPPECTKDRDI 296          
BLAST of CN182558 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.782e-38
Identity = 67/124 (54.03%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    1 EDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPECK 372
            +DVPIR +KN++   + +P +QPM +YS+LW ADDWATRGGLEK DWSKAPF A YK F ++GC V     FC +    WW+  A+Q L+A + RR RWVR  + +Y+YC DR+RFP P PEC+
Sbjct:  169 DDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGCPVP-GPTFCPSNPHNWWEGYAYQSLNAVEARRYRWVRVNHMVYDYCTDRSRFPVPPPECR 291          
The following BLAST results are available for this feature:
BLAST of CN182558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
XTH5_ARATH1.280e-6785.27Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN5.035e-6483.85Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN2.763e-6280.62Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTHB_PHAAN3.608e-6276.74Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT1.980e-6077.52Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB2.586e-6075.19Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH4_ARATH4.411e-6075.78Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_TOBAC7.524e-6078.63Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC2.859e-5975.57Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH6_ARATH2.782e-3854.03Probable xyloglucan endotransglucosylase/hydrolase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002K15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182558 ID=CN182558; Name=CN182558; organism=Citrus sinensis; type=EST; length=606bp
GAGGATGTGCCGATTAGAGTGTTCAAGAACAGCAAAGATTTGGGAGTGAG
GTTTCCATTCAACCAACCCATGAAGATATACTCAAGCCTGTGGAATGCAG
ATGACTGGGCAACGAGGGGCGGTTTGGAGAAGACGGACTGGTCGAAGGCT
CCTTTCATAGCCTCCTACAAGGGGTTCCACGTTGATGGGTGTGAGGTATC
TGTGAACGCCAAGTTCTGTGAGACACAGGGCAAGAGATGGTGGGATCAGA
AGGCGTTCCAAGACCTTGACGCCTACCAGTACAGGAGACTCAGATGGGTT
CGCCAGAAATACACCATCTATAACTACTGCAACGATCGTGCCCGCTTCCC
TACGCCTTCACCAGAATGCAAACGAGACCGTGACATTTAAGCGTCAATCT
GAGATTCGCTCTGTGTGTGTACCAAGTATCTTAGTATGCCTTTACCATTT
ATATTTATCAGAGGTATTGAAACAGGGCATGGGAGAGTGTATGTATCCAT
TTTACTTGCGTTCTTCATACATATTGTTGCTGCTTATTCTTATATGTATT
TTTTATCAAACCCTATTCGGGATGCATGGCAATAGAAAGTTTATGGGTAA
AAAAAA
back to top