CN182556

Overview
NameCN182556
Unique NameCN182556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN182556 vs. ExPASy Swiss-Prot
Match: SPCS1_ARATH (Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.691e-22
Identity = 47/80 (58.75%), Postives = 52/80 (65.00%), Query Frame = 3 
Query:   24 MDWQGQKLAEHLMQIXXXXXXXXXXXTGYIMGSFQMMILIYAGGXXXXXXXXXPNWPFFNRHPLKWLDPSEAEKHPKPQL 263
            MDWQGQKL E LMQI            GY   SF+ M+LIYAGG         PNWPF+N HPLKWLDPSEAEKHPKP++
Sbjct:    1 MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYNLHPLKWLDPSEAEKHPKPEV 80
The following BLAST results are available for this feature:
BLAST of CN182556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPCS1_ARATH6.691e-2258.75Probable signal peptidase complex subunit 1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002K14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182556 ID=CN182556; Name=CN182556; organism=Citrus sinensis; type=EST; length=449bp
GAGGCTTGACTCTTCGTATCACGATGGATTGGCAAGGGCAAAAATTAGCG
GAGCATCTGATGCAAATTTTGTTGTTGGCATTCGCTGTAGTGGCATTTGC
TACTGGTTACATAATGGGATCATTTCAGATGATGATTTTGATATATGCTG
GCGGGGTTGTTCTCACCACACTGGTAACTGTGCCAAACTGGCCTTTCTTT
AATCGCCATCCTCTGAAGTGGTTGGATCCAAGCGAGGCTGAAAAACATCC
CAAGCCTCAGCTGGCTGTCAACTCGAAGAAAAAATCTGTTAAGAAAAATT
GACTTATCAGGTGTTAGCATTTGGTAGGAACTTCTTTACTTTTTTGTTGT
GGCTGTGGTCTTCTTAAAAGAGGATGATACAGTGCACTGGCTTGCTTGCC
CAACAGCTTGAATTTATAGACAATGATAGAAACAAAAAAAAAAAAAAAA
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