CN182555

Overview
NameCN182555
Unique NameCN182555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length446
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN182555 vs. ExPASy Swiss-Prot
Match: SPCS1_ARATH (Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.535e-22
Identity = 48/80 (60.00%), Postives = 53/80 (66.25%), Query Frame = -2 
Query:  185 MDWQGQKLAEHLMQIXXXXXXXXXXATGYIMGSFQMMILIYAGGXXXXXXXXVPNWPFFNRHPLKWLDPSEAEKHPKPQL 424
            MDWQGQKL E LMQI            GY   SF+ M+LIYAGG        VPNWPF+N HPLKWLDPSEAEKHPKP++
Sbjct:    1 MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYNLHPLKWLDPSEAEKHPKPEV 80
The following BLAST results are available for this feature:
BLAST of CN182555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPCS1_ARATH6.535e-2260.00Probable signal peptidase complex subunit 1 OS=Ara... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002K14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182555 ID=CN182555; Name=CN182555; organism=Citrus sinensis; type=EST; length=446bp
TTTTTTTTTTTTTTGTTTCTATCATTGTCTATAAATTCAAGCTGTTGGGC
AAGCAAGCCAGTGCACTGTATCATCCTCTTTTAAGAAGACCACAGCCACA
ACAAAAAAGTAAAGAAGTTCCTACCAAATGCTAACACCTGATAAGTCAAT
TTTTCTTAACAGATTTTTTCTTCGAGTTGACAGCCAGCTGAGGCTTGGGA
TGTTTTTCAGCCTCGCTTGGATCCAACCACTTCAGAGGATGGCGATTAAA
GAAAGGCCAGTTTGGCACAGTTACCAGTGTGGTGAGAACAACCCCGCCAG
CATATATCAAAATCATCATCTGAAATGATCCCATTATGTAACCAGTAGCA
AATGCCACTACAGCGAATGCCAACAACAAAATTTGCATCAGATGCTCCGC
TAATTTTTGCCCTTGCCAATCCATCGTGATACGAAGAGTCAAGCCT
back to top