FC921845

Overview
NameFC921845
Unique NameFC921845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig935 contig Csv1_Contig935:42..304. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MEP1_SOYBN (Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.427e-17
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    2 AFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLDGDENWV 253
            AF P+ +L D  K+  A AF +W+   ++ F  T  Y TA+I+I F + +HGD  PFDGP G L HAF+P +GR H D DE WV
Sbjct:  153 AFSPEPRLDDTFKSAIARAFSKWTPVVNIAFQETTSYETANIKILFASKNHGDPYPFDGPGGILGHAFAPTDGRCHFDADEYWV 236          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP13_MOUSE (Collagenase 3 OS=Mus musculus GN=Mmp13 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.611e-14
Identity = 44/81 (54.32%), Postives = 49/81 (60.49%), Query Frame = 2
Query:   32 EVKNVFATAFDRWSEATSLTFTRTGVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVITS 262
            EV+  F  AF  WS+ T L FTR  +Y  TADI I F T +HGD  PFDGP G LAHAF P PN  G  H D DE W  +S
Sbjct:  134 EVEKAFRKAFKVWSDVTPLNFTR--IYDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 212          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP13_HORSE (Collagenase 3 OS=Equus caballus GN=MMP13 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.329e-14
Identity = 44/81 (54.32%), Postives = 49/81 (60.49%), Query Frame = 2
Query:   32 EVKNVFATAFDRWSEATSLTFTRTGVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVITS 262
            EV+  F  AF  WS+ T L FTR  +Y  TADI I F T +HGD  PFDGP G LAHAF P PN  G  H D DE W  +S
Sbjct:  134 EVEKAFKKAFKVWSDVTPLNFTR--LYNGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 212          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP13_RABIT (Collagenase 3 OS=Oryctolagus cuniculus GN=MMP13 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.250e-13
Identity = 43/80 (53.75%), Postives = 47/80 (58.75%), Query Frame = 2
Query:   32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVITS 262
            EV+  F  AF  WS+ T L FTR     TADI I F T +HGD  PFDGP G LAHAF P PN  G  H D DE W  +S
Sbjct:  133 EVEKAFKKAFKVWSDVTPLNFTRIH-NGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 211          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP13_BOVIN (Collagenase 3 OS=Bos taurus GN=MMP13 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.250e-13
Identity = 43/80 (53.75%), Postives = 47/80 (58.75%), Query Frame = 2
Query:   32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVITS 262
            EV+  F  AF  WS+ T L FTR     TADI I F T +HGD  PFDGP G LAHAF P PN  G  H D DE W  +S
Sbjct:  133 EVEKAFRKAFKVWSDVTPLNFTRIH-NGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 211          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP13_RAT (Collagenase 3 (Fragment) OS=Rattus norvegicus GN=Mmp13 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.633e-13
Identity = 43/80 (53.75%), Postives = 47/80 (58.75%), Query Frame = 2
Query:   32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVITS 262
            EV+  F  AF  WS+ T L FTR     TADI I F T +HGD  PFDGP G LAHAF P PN  G  H D DE W  +S
Sbjct:  128 EVEKAFRKAFKVWSDVTPLNFTRIHD-GTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNLGGDAHFDDDETWTSSS 206          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP18_XENLA (Matrix metalloproteinase-18 OS=Xenopus laevis GN=mmp18 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.785e-13
Identity = 44/90 (48.89%), Postives = 48/90 (53.33%), Query Frame = 2
Query:    5 FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTGVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVITS 262
            F PD    D V+     AF  WS+ T LTFTR  +Y   +DI I F  GDH D  PFDG  G LAHAF P N   G  H D DE W  TS
Sbjct:  121 FTPDLPQAD-VETAIQRAFKVWSDVTPLTFTR--IYNEVSDIEISFTAGDHKDNSPFDGSGGILAHAFQPGNGIGGDAHFDEDETWTKTS 207          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP8_HUMAN (Neutrophil collagenase OS=Homo sapiens GN=MMP8 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.637e-13
Identity = 39/80 (48.75%), Postives = 44/80 (55.00%), Query Frame = 2
Query:   32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVITS 262
            EV+     AF+ WS A+ L FTR      ADI I F+  DHGD  PFDGP G LAHAF P     G  H D +E W  TS
Sbjct:  128 EVERAIKDAFELWSVASPLIFTRIS-QGEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTS 206          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP28_HUMAN (Matrix metalloproteinase-28 OS=Homo sapiens GN=MMP28 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12
Identity = 36/85 (42.35%), Postives = 44/85 (51.76%), Query Frame = 2
Query:   11 PDNQLTDEVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDG--EPFDGPMGTLAHAFSPPNGRFHLDGDENWVIT 259
            P++     V+     AF  WS  ++L F        ADIR+ FF GDH DG    FDGP G LAHAF P  G  H D DE W ++
Sbjct:  143 PEHLPEPAVRGAVRAAFQLWSNVSALEFWEAPATGPADIRLTFFQGDHNDGLGNAFDGPGGALAHAFLPRRGEAHFDQDERWSLS 227          
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: HE_HEMPU (50 kDa hatching enzyme OS=Hemicentrotus pulcherrimus PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12
Identity = 35/74 (47.30%), Postives = 42/74 (56.76%), Query Frame = 2
Query:   35 VKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLDGDENWVI 256
            +KN    AF  W + +SLTF      ++ DIRI F + +HGDG  FDG  G LAHAF P NG  H D  E W I
Sbjct:  199 IKNELRRAFQVWDDVSSLTFREVVDSSSVDIRIKFGSYEHGDGISFDGQGGVLAHAFLPRNGDAHFDDSERWTI 272          
The following BLAST results are available for this feature:
BLAST of FC921845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
MEP1_SOYBN1.427e-1747.62Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2[more]
MMP13_MOUSE5.611e-1454.32Collagenase 3 OS=Mus musculus GN=Mmp13 PE=1 SV=1[more]
MMP13_HORSE7.329e-1454.32Collagenase 3 OS=Equus caballus GN=MMP13 PE=2 SV=1[more]
MMP13_RABIT1.250e-1353.75Collagenase 3 OS=Oryctolagus cuniculus GN=MMP13 PE... [more]
MMP13_BOVIN1.250e-1353.75Collagenase 3 OS=Bos taurus GN=MMP13 PE=2 SV=1[more]
MMP13_RAT1.633e-1353.75Collagenase 3 (Fragment) OS=Rattus norvegicus GN=M... [more]
MMP18_XENLA2.785e-1348.89Matrix metalloproteinase-18 OS=Xenopus laevis GN=m... [more]
MMP8_HUMAN3.637e-1348.75Neutrophil collagenase OS=Homo sapiens GN=MMP8 PE=... [more]
MMP28_HUMAN1.058e-1242.35Matrix metalloproteinase-28 OS=Homo sapiens GN=MMP... [more]
HE_HEMPU1.058e-1247.3050 kDa hatching enzyme OS=Hemicentrotus pulcherrim... [more]

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Properties
Property NameValue
Genbank descriptionC06053A10T7 RindPdigS Citrus sinensis cDNA clone C06053A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921845 ID=FC921845; Name=FC921845; organism=Citrus sinensis; type=EST; length=263bp
CGCGTTCTTGCCCGATAACCAATTGACTGACGAAGTCAAGAACGTATTTG
CGACAGCCTTCGACCGCTGGTCGGAAGCGACGTCGTTGACTTTCACTCGG
ACGGGCGTTTACACGACCGCCGATATCAGGATCGGGTTCTTTACTGGCGA
TCACGGTGACGGCGAGCCATTTGATGGGCCTATGGGCACGCTGGCGCACG
CCTTCTCGCCACCAAATGGACGGTTCCATTTAGACGGCGACGAGAACTGG
GTAATCACGAGTG
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