FC921845
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MEP1_SOYBN (Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 1.427e-17 Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 2 Query: 2 AFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLDGDENWV 253 AF P+ +L D K+ A AF +W+ ++ F T Y TA+I+I F + +HGD PFDGP G L HAF+P +GR H D DE WV Sbjct: 153 AFSPEPRLDDTFKSAIARAFSKWTPVVNIAFQETTSYETANIKILFASKNHGDPYPFDGPGGILGHAFAPTDGRCHFDADEYWV 236
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP13_MOUSE (Collagenase 3 OS=Mus musculus GN=Mmp13 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.611e-14 Identity = 44/81 (54.32%), Postives = 49/81 (60.49%), Query Frame = 2 Query: 32 EVKNVFATAFDRWSEATSLTFTRTGVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVITS 262 EV+ F AF WS+ T L FTR +Y TADI I F T +HGD PFDGP G LAHAF P PN G H D DE W +S Sbjct: 134 EVEKAFRKAFKVWSDVTPLNFTR--IYDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 212
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP13_HORSE (Collagenase 3 OS=Equus caballus GN=MMP13 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.329e-14 Identity = 44/81 (54.32%), Postives = 49/81 (60.49%), Query Frame = 2 Query: 32 EVKNVFATAFDRWSEATSLTFTRTGVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVITS 262 EV+ F AF WS+ T L FTR +Y TADI I F T +HGD PFDGP G LAHAF P PN G H D DE W +S Sbjct: 134 EVEKAFKKAFKVWSDVTPLNFTR--LYNGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 212
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP13_RABIT (Collagenase 3 OS=Oryctolagus cuniculus GN=MMP13 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.250e-13 Identity = 43/80 (53.75%), Postives = 47/80 (58.75%), Query Frame = 2 Query: 32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVITS 262 EV+ F AF WS+ T L FTR TADI I F T +HGD PFDGP G LAHAF P PN G H D DE W +S Sbjct: 133 EVEKAFKKAFKVWSDVTPLNFTRIH-NGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 211
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP13_BOVIN (Collagenase 3 OS=Bos taurus GN=MMP13 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.250e-13 Identity = 43/80 (53.75%), Postives = 47/80 (58.75%), Query Frame = 2 Query: 32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVITS 262 EV+ F AF WS+ T L FTR TADI I F T +HGD PFDGP G LAHAF P PN G H D DE W +S Sbjct: 133 EVEKAFRKAFKVWSDVTPLNFTRIH-NGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS 211
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP13_RAT (Collagenase 3 (Fragment) OS=Rattus norvegicus GN=Mmp13 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.633e-13 Identity = 43/80 (53.75%), Postives = 47/80 (58.75%), Query Frame = 2 Query: 32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVITS 262 EV+ F AF WS+ T L FTR TADI I F T +HGD PFDGP G LAHAF P PN G H D DE W +S Sbjct: 128 EVEKAFRKAFKVWSDVTPLNFTRIHD-GTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNLGGDAHFDDDETWTSSS 206
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP18_XENLA (Matrix metalloproteinase-18 OS=Xenopus laevis GN=mmp18 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.785e-13 Identity = 44/90 (48.89%), Postives = 48/90 (53.33%), Query Frame = 2 Query: 5 FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTGVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVITS 262 F PD D V+ AF WS+ T LTFTR +Y +DI I F GDH D PFDG G LAHAF P N G H D DE W TS Sbjct: 121 FTPDLPQAD-VETAIQRAFKVWSDVTPLTFTR--IYNEVSDIEISFTAGDHKDNSPFDGSGGILAHAFQPGNGIGGDAHFDEDETWTKTS 207
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP8_HUMAN (Neutrophil collagenase OS=Homo sapiens GN=MMP8 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.637e-13 Identity = 39/80 (48.75%), Postives = 44/80 (55.00%), Query Frame = 2 Query: 32 EVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVITS 262 EV+ AF+ WS A+ L FTR ADI I F+ DHGD PFDGP G LAHAF P G H D +E W TS Sbjct: 128 EVERAIKDAFELWSVASPLIFTRIS-QGEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTS 206
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: MMP28_HUMAN (Matrix metalloproteinase-28 OS=Homo sapiens GN=MMP28 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12 Identity = 36/85 (42.35%), Postives = 44/85 (51.76%), Query Frame = 2 Query: 11 PDNQLTDEVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDG--EPFDGPMGTLAHAFSPPNGRFHLDGDENWVIT 259 P++ V+ AF WS ++L F ADIR+ FF GDH DG FDGP G LAHAF P G H D DE W ++ Sbjct: 143 PEHLPEPAVRGAVRAAFQLWSNVSALEFWEAPATGPADIRLTFFQGDHNDGLGNAFDGPGGALAHAFLPRRGEAHFDQDERWSLS 227
BLAST of FC921845 vs. ExPASy Swiss-Prot
Match: HE_HEMPU (50 kDa hatching enzyme OS=Hemicentrotus pulcherrimus PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12 Identity = 35/74 (47.30%), Postives = 42/74 (56.76%), Query Frame = 2 Query: 35 VKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLDGDENWVI 256 +KN AF W + +SLTF ++ DIRI F + +HGDG FDG G LAHAF P NG H D E W I Sbjct: 199 IKNELRRAFQVWDDVSSLTFREVVDSSSVDIRIKFGSYEHGDGISFDGQGGVLAHAFLPRNGDAHFDDSERWTI 272 The following BLAST results are available for this feature:
BLAST of FC921845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921845 ID=FC921845; Name=FC921845; organism=Citrus sinensis; type=EST; length=263bpback to top |