CN182548

Overview
NameCN182548
Unique NameCN182548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10292 contig Csv1_Contig10292:5..641. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182548 vs. ExPASy Swiss-Prot
Match: PRP31_XENLA (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 76/176 (43.18%), Postives = 109/176 (61.93%), Query Frame = 3
Query:  114 TLADSFLADLEELSDNEADVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMD--LTLVDLEGLLPSAIIMVVSVTAST 635
            +LAD  LADLEE ++ E     EE  +D  ++             LN + + +++KL  S+ F++I+ K+E  +Q     S     +E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPELESLV + +DY R VK++GN +D      +L+ +L +A IMVVSVTAST
Sbjct:    2 SLADELLADLEEAAEEE-----EENLIDEDDLETIEEVDEEMQVDLNAESVKSIAKLSDSKLFSEILLKIEGYIQKQPKASEVMGPVEAAPEYKVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNNLDKCKNNENLQQILTNATIMVVSVTAST 172          
BLAST of CN182548 vs. ExPASy Swiss-Prot
Match: PRP31_XENTR (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.719e-29
Identity = 74/176 (42.05%), Postives = 109/176 (61.93%), Query Frame = 3
Query:  114 TLADSFLADLEELSDNEADVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMD--LTLVDLEGLLPSAIIMVVSVTAST 635
            +LAD  LADLEE ++ E     EE  +D  ++             LN + + +++KL  S+ F++I+ K++  ++     S     +E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPELESLV + +DY R VK++GN +D      +L+ +L +A IMVVSVTAST
Sbjct:    2 SLADELLADLEEAAEEE-----EENLIDEDDLETIEEVQEEMQVDLNAESVKSIAKLSDSKLFSEILLKIDGYIKKQPKASEVMGPVEAAPEYKVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNNLDKCKNNENLQQILTNATIMVVSVTAST 172          
BLAST of CN182548 vs. ExPASy Swiss-Prot
Match: PRP31_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.823e-28
Identity = 77/178 (43.26%), Postives = 108/178 (60.67%), Query Frame = 3
Query:  114 TLADSFLADLEELSDNEADVNEEEGGV--DATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMD--LTLVDLEGLLPSAIIMVVSVTAST 635
            +LAD  LADLEE ++      EEEGG   +                 L+ D + +++KL  S+ F +IM K+E  +   ++ S     +E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPELESLV + +DY R VK++GN +D      +L+ +L +A IMVVSVTAST
Sbjct:    2 SLADELLADLEEAAE------EEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKSIAKLWDSKMFAEIMMKIEEYISKQANASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTAST 173          
BLAST of CN182548 vs. ExPASy Swiss-Prot
Match: PRP31_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-27
Identity = 77/178 (43.26%), Postives = 106/178 (59.55%), Query Frame = 3
Query:  114 TLADSFLADLEELSDNEADVNEEEGGV--DATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMD--LTLVDLEGLLPSAIIMVVSVTAST 635
            +LAD  LADLEE ++      EEEGG   +                 L+ D +  ++KL  S+ F +IM K+E  +   +  S     +E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPELESLV + +DY R VK++GN +D      +L+ +L +A IMVVSVTAST
Sbjct:    2 SLADELLADLEEAAE------EEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTAST 173          
BLAST of CN182548 vs. ExPASy Swiss-Prot
Match: PRP31_DANRE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.992e-25
Identity = 72/183 (39.34%), Postives = 103/183 (56.28%), Query Frame = 3
Query:  114 TLADSFLADLEELSDNEA----DVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVS---KLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVD--LEGLLPSAIIMVVSVTAST 635
            +LAD  LADLEE  + +         E  G                   ++Y   ++V+   KL+ S+ F +IM K+   + N    S     +E DPEY+LIV  N L+V+I+NE+ IIH F+RDKY  +FPELESLV + +DY R VK++GN ++    +  L+ +L +A IMVVSVTAST
Sbjct:    2 SLADELLADLEEAGEEDGLYPGGEEGESDGEPGERQVDGGLEDIPEEMEVDYSSTESVTSIAKLRHSKPFAEIMDKISHYVGNQRKNSEVSGPVEADPEYRLIVAANNLTVEIDNELNIIHKFVRDKYSKRFPELESLVPNALDYIRTVKELGNNLEKCKNNETLQQILTNATIMVVSVTAST 184          
BLAST of CN182548 vs. ExPASy Swiss-Prot
Match: PRP31_SCHPO (Pre-mRNA-processing factor 31 OS=Schizosaccharomyces pombe GN=prp31 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.243e-16
Identity = 58/199 (29.15%), Postives = 99/199 (49.75%), Query Frame = 3
Query:  114 TLADSFLADLEELSDN-EADVNEE------------------------EGGVDATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTAST 635
            +LAD  LADL+++ +  E+ + +E                        E  +D T +                D+ +N+ +L  S R  DI++  E     G++       +EDD EY LIVD N ++++I++EI+ +H  +++ Y  +FPEL SLV +  DY + V  + N++D +   L   LPSA +MV++ TA+T
Sbjct:    2 SLADELLADLDDIEETTESTITDELGPDAKKRRLELQLEEGNGISAELENDLDITKISDSAQKLPSEVANKFNDNNENIYQLLNSTRLRDIIEGTEK--YKGTEKQAITGNIEDDLEYHLIVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCKTVSSLLNDLDNSKTKL-SFLPSATVMVIATTATT 197          
The following BLAST results are available for this feature:
BLAST of CN182548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PRP31_XENLA1.499e-2943.18U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
PRP31_XENTR9.719e-2942.05U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
PRP31_MOUSE4.823e-2843.26U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus... [more]
PRP31_HUMAN1.075e-2743.26U4/U6 small nuclear ribonucleoprotein Prp31 OS=Hom... [more]
PRP31_DANRE4.992e-2539.34U4/U6 small nuclear ribonucleoprotein Prp31 OS=Dan... [more]
PRP31_SCHPO3.243e-1629.15Pre-mRNA-processing factor 31 OS=Schizosaccharomyc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002K08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182548 ID=CN182548; Name=CN182548; organism=Citrus sinensis; type=EST; length=637bp
GAGGGTGCATCAGTCGGTCCCCGTCCGCACGTTAGGCTATTAATCAATCA
CTCGGAGCAAACCCTAGGACAGGATTTAATCGTTTTCCTTCCCTCAAACT
CGAGACCATGGCAACTCTTGCTGATTCCTTCCTCGCTGACCTGGAAGAGT
TATCTGACAACGAAGCTGATGTTAATGAAGAGGAAGGAGGAGTTGATGCC
ACAAACATGGAAGAAGATATTGACGGTGACATTGAAGATATAGAAGCTCT
GAACTATGATGACTTGGACAATGTTTCAAAATTGCAGAAATCTCAGAGAT
TCACTGATATAATGCAGAAAGTTGAAGCTGCACTCCAGAACGGTTCTGAT
ATATCTAATCATGGAATGGTATTGGAGGATGATCCAGAGTATCAGCTAAT
TGTCGATTGTAATGTATTATCAGTTGACATAGAGAATGAGATTGTGATTA
TTCATAATTTCATTCGCGACAAGTACAGACTGAAATTTCCAGAGCTTGAA
TCTTTAGTCCATCACCCCATTGATTATGCCCGTGTTGTGAAAAAGATCGG
CAACGAAATGGACTTGACGCTTGTGGATCTGGAGGGGCTTTTACCCTCAG
CCATTATCATGGTGGTGTCCGTCACAGCTTCAACTAC
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