CN182548
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN182548 vs. ExPASy Swiss-Prot
Match: PRP31_XENLA (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29 Identity = 76/176 (43.18%), Postives = 109/176 (61.93%), Query Frame = 3 Query: 114 TLADSFLADLEELSDNEADVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMD--LTLVDLEGLLPSAIIMVVSVTAST 635 +LAD LADLEE ++ E EE +D ++ LN + + +++KL S+ F++I+ K+E +Q S +E PEY++IVD N L+V+IENE+ IIH FIRDKY +FPELESLV + +DY R VK++GN +D +L+ +L +A IMVVSVTAST Sbjct: 2 SLADELLADLEEAAEEE-----EENLIDEDDLETIEEVDEEMQVDLNAESVKSIAKLSDSKLFSEILLKIEGYIQKQPKASEVMGPVEAAPEYKVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNNLDKCKNNENLQQILTNATIMVVSVTAST 172
BLAST of CN182548 vs. ExPASy Swiss-Prot
Match: PRP31_XENTR (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 9.719e-29 Identity = 74/176 (42.05%), Postives = 109/176 (61.93%), Query Frame = 3 Query: 114 TLADSFLADLEELSDNEADVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMD--LTLVDLEGLLPSAIIMVVSVTAST 635 +LAD LADLEE ++ E EE +D ++ LN + + +++KL S+ F++I+ K++ ++ S +E PEY++IVD N L+V+IENE+ IIH FIRDKY +FPELESLV + +DY R VK++GN +D +L+ +L +A IMVVSVTAST Sbjct: 2 SLADELLADLEEAAEEE-----EENLIDEDDLETIEEVQEEMQVDLNAESVKSIAKLSDSKLFSEILLKIDGYIKKQPKASEVMGPVEAAPEYKVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNNLDKCKNNENLQQILTNATIMVVSVTAST 172
BLAST of CN182548 vs. ExPASy Swiss-Prot
Match: PRP31_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 4.823e-28 Identity = 77/178 (43.26%), Postives = 108/178 (60.67%), Query Frame = 3 Query: 114 TLADSFLADLEELSDNEADVNEEEGGV--DATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMD--LTLVDLEGLLPSAIIMVVSVTAST 635 +LAD LADLEE ++ EEEGG + L+ D + +++KL S+ F +IM K+E + ++ S +E PEY++IVD N L+V+IENE+ IIH FIRDKY +FPELESLV + +DY R VK++GN +D +L+ +L +A IMVVSVTAST Sbjct: 2 SLADELLADLEEAAE------EEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKSIAKLWDSKMFAEIMMKIEEYISKQANASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTAST 173
BLAST of CN182548 vs. ExPASy Swiss-Prot
Match: PRP31_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.075e-27 Identity = 77/178 (43.26%), Postives = 106/178 (59.55%), Query Frame = 3 Query: 114 TLADSFLADLEELSDNEADVNEEEGGV--DATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMD--LTLVDLEGLLPSAIIMVVSVTAST 635 +LAD LADLEE ++ EEEGG + L+ D + ++KL S+ F +IM K+E + + S +E PEY++IVD N L+V+IENE+ IIH FIRDKY +FPELESLV + +DY R VK++GN +D +L+ +L +A IMVVSVTAST Sbjct: 2 SLADELLADLEEAAE------EEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTAST 173
BLAST of CN182548 vs. ExPASy Swiss-Prot
Match: PRP31_DANRE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.992e-25 Identity = 72/183 (39.34%), Postives = 103/183 (56.28%), Query Frame = 3 Query: 114 TLADSFLADLEELSDNEA----DVNEEEGGVDATNMXXXXXXXXXXXXALNYDDLDNVS---KLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVD--LEGLLPSAIIMVVSVTAST 635 +LAD LADLEE + + E G ++Y ++V+ KL+ S+ F +IM K+ + N S +E DPEY+LIV N L+V+I+NE+ IIH F+RDKY +FPELESLV + +DY R VK++GN ++ + L+ +L +A IMVVSVTAST Sbjct: 2 SLADELLADLEEAGEEDGLYPGGEEGESDGEPGERQVDGGLEDIPEEMEVDYSSTESVTSIAKLRHSKPFAEIMDKISHYVGNQRKNSEVSGPVEADPEYRLIVAANNLTVEIDNELNIIHKFVRDKYSKRFPELESLVPNALDYIRTVKELGNNLEKCKNNETLQQILTNATIMVVSVTAST 184
BLAST of CN182548 vs. ExPASy Swiss-Prot
Match: PRP31_SCHPO (Pre-mRNA-processing factor 31 OS=Schizosaccharomyces pombe GN=prp31 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.243e-16 Identity = 58/199 (29.15%), Postives = 99/199 (49.75%), Query Frame = 3 Query: 114 TLADSFLADLEELSDN-EADVNEE------------------------EGGVDATNMXXXXXXXXXXXXALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTAST 635 +LAD LADL+++ + E+ + +E E +D T + D+ +N+ +L S R DI++ E G++ +EDD EY LIVD N ++++I++EI+ +H +++ Y +FPEL SLV + DY + V + N++D + L LPSA +MV++ TA+T Sbjct: 2 SLADELLADLDDIEETTESTITDELGPDAKKRRLELQLEEGNGISAELENDLDITKISDSAQKLPSEVANKFNDNNENIYQLLNSTRLRDIIEGTEK--YKGTEKQAITGNIEDDLEYHLIVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCKTVSSLLNDLDNSKTKL-SFLPSATVMVIATTATT 197 The following BLAST results are available for this feature:
BLAST of CN182548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN182548 ID=CN182548; Name=CN182548; organism=Citrus sinensis; type=EST; length=637bpback to top |