CN182545

Overview
NameCN182545
Unique NameCN182545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13781 contig Csv1_Contig13781:97..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 4.862e-51
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.862e-51
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 4.862e-51
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.862e-51
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.862e-51
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 4.862e-51
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.862e-51
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.862e-51
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 4.862e-51
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CN182545 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 4.862e-51
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = -1 
Query:  331 ALYCARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 645
            A   ARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   22 ATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of CN182545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H33_VITVI4.862e-5197.14Histone H3.3 OS=Vitis vinifera PE=2 SV=3[more]
H33_TOBAC4.862e-5197.14Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1[more]
H33_PINPS4.862e-5197.14Histone H3.3 OS=Pinus pinaster PE=2 SV=3[more]
H33_ORYSJ4.862e-5197.14Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3... [more]
H33_ORYSI4.862e-5197.14Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H33_ORYCO4.862e-5197.14Histone H3.3 OS=Oryza coarctata PE=2 SV=3[more]
H33_MEDSA4.862e-5197.14Histone H3.3 OS=Medicago sativa PE=1 SV=2[more]
H33_LOLTE4.862e-5197.14Histone H3.3 OS=Lolium temulentum PE=2 SV=2[more]
H33_LOLMU4.862e-5197.14Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=... [more]
H33_GOSHI4.862e-5197.14Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002K07_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182545 ID=CN182545; Name=CN182545; organism=Citrus sinensis; type=EST; length=816bp
GGGCCCCCTTGATAGAGCAAATAATAGAGATGTTCAACACCACCACTATT
GTGGCAACAGGTATCCAAAAGAACACATAAAAGCCAGTCTCTTATGGCGA
ATTAAAATCCCCATCATCAACAAATAGACATTATAAAACACCACCAAAAA
CAAACCCAGATGATGACAAAAGCCATATTCTAATAACTACTGGAATCCTA
CCCCTATCTACCCCCACCAACCCCCACGTACAAATTAACACATTACAACT
TCCCCCTTCCCTTCCAGTCATTCAATTGAAGCAAGCAGCAATTACGCTTA
AGCACGCTCGCCACGGATCCTACGGGCAAGCTGTATGTCCTTGGGCATAA
TAGTGACACGCTTTGCATGAATGGCGCAGAGGTTAGTGTCCTCGAAGAGA
CCAACAAGGTAAGCCTCCGCTGCCTCCTGCAGGGCCAGTACTGCATGGCT
CTGGAAACGCAGATCAGTCTTAAAGTCCTGAGCAATTTCACGAACAAGTC
TCTGGAATGGGAGTTTCCTGATAAGCAGCTCGGTACTCTTCTGGTACTTG
CGAATTTCTCGAAGGGCGACGGTTCCAGGACGGTAACGATGAGGCTTCTT
AACACCACCGGTGGTGGGCGCAGACTTACGGGCGCAATAAAGAGCCCTCT
ATTTCCAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACAC
CTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAAGGAA
GCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACC
GTTGTTGTCATGGACG
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