CN182543

Overview
NameCN182543
Unique NameCN182543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182543 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.480e-25
Identity = 52/124 (41.94%), Postives = 84/124 (67.74%), Query Frame = -1
Query:  216 NLISWSSRKQQTVARSSTEAEYRSVAATAAELRWVCSLLAELGVTLQSSLVVYCDNIGATQLSSNPVFHSRMKHVAVDYHFICEQVQSGLLRVAHVSSADQLADLLTKPLPRSQFLLLRDKIGL 587
            NLI W++++Q +VA SSTEAEY ++     E  W+  LL  + + L++ + +Y DN G   +++NP  H R KH+ + YHF  EQVQ+ ++ + ++ + +QLAD+ TKPLP ++F+ LRDK+GL
Sbjct: 1277 NLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400          
BLAST of CN182543 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 55/130 (42.31%), Postives = 80/130 (61.54%), Query Frame = -1
Query:  216 LSILGGNLISWSSRKQQTVARSSTEAEYRSVAATAAELRWVCSLLAELGVTLQSSLVVYCDNIGATQLSSNPVFHSRMKHVAVDYHFICEQVQSGLLRVAHVSSADQLADLLTKPLPRSQFLLLRDKIGL 605
            L    G  ISW S+ Q+ VA S+TEAEY +   T  E+ W+   L ELG+  Q   VVYCD+  A  LS N ++H+R KH+ V YH+I E V    L+V  +S+ +  AD+LTK +PR++F L ++ +G+
Sbjct: 1197 LFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLH-QKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325          
The following BLAST results are available for this feature:
BLAST of CN182543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
COPIA_DROME1.480e-2541.94Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
POLX_TOBAC2.000e-2242.31Retrovirus-related Pol polyprotein from transposon... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002K06_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182543 ID=CN182543; Name=CN182543; organism=Citrus sinensis; type=EST; length=677bp
GGCCCCCTTTTTTGATAGAAACAATATATAATACAACTTTTACAACAAGA
ATAACAAAAAGTATCAGAAAAGAAGGATGACTCAGAGAAGAGTTCTATTA
TAAAAGAAGATTAAAGTTCTATTCCAAAGGAAGACTCAATCAACTTAAAG
CAGCAATTGAAACTGCAAATGACACATATGTTCTTTATGCCCTCTCAAGA
TAGGCCACGAGTAAAGAGGCCAATCTTGTCTCTTAGCAGTAGGAACTGAG
AACGTGGCAAAGGTTTGGTGAGGAGATCAGCAAGTTGGTCGGCAGAAGAA
ACATGAGCCACACGAAGTAAACCAGATTGAACCTGTTCACAAATAAAATG
GTAATCCACTGCTACATGTTTCATTCGAGAGTGAAACACAGGATTGGAGC
TTAACTGAGTAGCACCAATGTTATCACAATAGACAACTAGAGAAGATTGC
AAAGTCACACCAAGTTCAGCAAGCAGTGAACATACCCACCGAAGTTCAGC
AGCAGTAGCAGCAACTGAACGATATTCCGCTTCTGTAGAAGAACGAGCAA
CAGTTTGTTGCTTCCTAGAACTCCAAGAAATAAGATTCCCGCCCAAGATA
GACAAGGTAAGCACTAGTGGAAGAGTAATCATCTTTATTGCCGGCCCAGT
CAACATCCGAGAACGCATGAAGACCAT
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