CN189100

Overview
NameCN189100
Unique NameCN189100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10338 contig Csv1_Contig10338:219..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189100 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.213e-36
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 2
Query:    2 RGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 271
            R QMNFKRLSLTDI IDI RVPKKK LI+AMEKADVKNKWE SSWGRKLIVQK+RA+LNDFDRFK+MLAKIKK G+VRQELAKLKKE  A
Sbjct:   45 RIQMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKKEITA 134          
BLAST of CN189100 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.434e-35
Identity = 75/90 (83.33%), Postives = 82/90 (91.11%), Query Frame = 2
Query:    2 RGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 271
            R QMN KRLSLTDI IDI RVPKKK LI+AMEKADVKNKWE SSWGRKLIVQK+RA+LNDFDRFK+MLAKIK+ G+VRQELAKLK+E AA
Sbjct:   45 RIQMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIAA 134          
BLAST of CN189100 vs. ExPASy Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.655e-31
Identity = 68/89 (76.40%), Postives = 75/89 (84.27%), Query Frame = 2
Query:    2 RGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKKENA 268
            R  +NFKRLSLTD+KIDI RVPKKK LI A+E ADVKNKW  SSWGRKLIV+K RA+LNDFDRFK+MLAKIK+   VRQELAKLKK  A
Sbjct:   45 RSPINFKRLSLTDLKIDIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133          
BLAST of CN189100 vs. ExPASy Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 2
Query:    2 RGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 259
            R  MNFK L LT++K   P   K   +  A EK ++  KWE S   +K+  ++KR +L DF+RFKLM AK  +  L++ E  KL+K
Sbjct:   47 RKSMNFKELELTNLKAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKLRK 132          
BLAST of CN189100 vs. ExPASy Swiss-Prot
Match: RL14_RAT (60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.964e-12
Identity = 31/86 (36.05%), Postives = 54/86 (62.79%), Query Frame = 2
Query:    2 RGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 259
            R  M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+  ++++A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:   47 RQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CN189100 vs. ExPASy Swiss-Prot
Match: RL14_MOUSE (60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.964e-12
Identity = 31/86 (36.05%), Postives = 54/86 (62.79%), Query Frame = 2
Query:    2 RGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 259
            R  M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+  ++++A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:   47 RQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CN189100 vs. ExPASy Swiss-Prot
Match: RL14_PIG (60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 32/86 (37.21%), Postives = 54/86 (62.79%), Query Frame = 2
Query:    2 RGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 259
            R  M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+  ++K+A + DFDR+K+M A+  +  L++ E+ KL+K
Sbjct:   47 RQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQK 132          
BLAST of CN189100 vs. ExPASy Swiss-Prot
Match: RL14_HUMAN (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 31/86 (36.05%), Postives = 53/86 (61.63%), Query Frame = 2
Query:    2 RGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 259
            R  M FK + LTD  +  P    +K +  A +KAD+  KW ++ W +K+  ++++A + DFDRFK+M AK  +  +++ E+ KL+K
Sbjct:   47 RQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 132          
BLAST of CN189100 vs. ExPASy Swiss-Prot
Match: RL14_BOVIN (60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 32/86 (37.21%), Postives = 54/86 (62.79%), Query Frame = 2
Query:    2 RGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 259
            R  M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+  ++K+A + DFDR+K+M A+  +  L++ E+ KL+K
Sbjct:   47 RQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKIEVKKLQK 132          
BLAST of CN189100 vs. ExPASy Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 2
Query:    2 RGQMNFKRLSLTDIKID-IPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLK 256
            R  +N KR++LT IK+D I R      +      A V   + +S WG+KL  ++KRA+L+DF RFK+M+A++KK   +  ELAKLK
Sbjct:   47 RKVINVKRIALTSIKVDDIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELAKLK 132          
The following BLAST results are available for this feature:
BLAST of CN189100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RL142_ARATH2.213e-3685.5660S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL141_ARATH1.434e-3583.3360S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL14_PEA3.655e-3176.40Probable 60S ribosomal protein L14 OS=Pisum sativu... [more]
RL14_LUMRU1.000e-1241.8660S ribosomal protein L14 OS=Lumbricus rubellus GN... [more]
RL14_RAT4.964e-1236.0560S ribosomal protein L14 OS=Rattus norvegicus GN=... [more]
RL14_MOUSE4.964e-1236.0560S ribosomal protein L14 OS=Mus musculus GN=Rpl14... [more]
RL14_PIG6.483e-1237.2160S ribosomal protein L14 OS=Sus scrofa GN=RPL14 P... [more]
RL14_HUMAN6.483e-1236.0560S ribosomal protein L14 OS=Homo sapiens GN=RPL14... [more]
RL14_BOVIN8.466e-1237.2160S ribosomal protein L14 OS=Bos taurus GN=RPL14 P... [more]
RL14_GRIJA7.167e-1143.0260S ribosomal protein L14 OS=Griffithsia japonica ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189100 ID=CN189100; Name=CN189100; organism=Citrus sinensis; type=EST; length=563bp
GAGGGGCCAAATGAACTTCAAGAGGCTTTCACTGACTGATATCAAAATTG
ACATTCCCCGTGTACCGAAGAAGAAGACATTGATTGATGCTATGGAGAAG
GCTGATGTTAAGAACAAGTGGGAGAGTAGCTCTTGGGGAAGAAAGCTGAT
TGTTCAGAAGAAGAGAGCATCACTTAACGACTTTGACAGGTTCAAGCTTA
TGTTGGCCAAGATCAAGAAGGGAGGTTTGGTCAGGCAGGAGCTTGCGAAG
CTGAAGAAGGAGAATGCAGCCTAATGTTATCTGATATGTAGCTTCCAATT
TTGTTATGATGATGGCTAAGTTTTCTTCAAGAATGTTTTACATTTATTTT
TGTGTCAGTTCTGAGATTAAGACCAATTTAAGAAGATGCTTTTTATATTA
TGATACTGTAGTCAGTTTTACCTGCAAATCCTTCTTGTCTGTGGGCTCGT
TTTACTTTTTAAGAATTTTTACATGGATGTGTTATCATCTTGTGTTTCAT
TTGCTACAAATTCGAAAATTAGGAATGGTGGGGCCAATGATTTGTCTAAA
AAAAAAAAAAAAA
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