CN182542

Overview
NameCN182542
Unique NameCN182542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182542_ssr33 microsatellite CN182542_ssr33:33..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2330 contig Csv1_Contig2330:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 2.397e-100
Identity = 174/248 (70.16%), Postives = 194/248 (78.23%), Query Frame = 3
Query:   48 MAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 791
            MAKSPETE P KA GWAARD +GT SPFHFSRRE G DDV++KIL+CG+CHSDLH  +N+WG T YP+VPGHEIVG VTKVG NV KF+ GD VGVGV+V SCQ CE+C Q LE YCP  + TYNS    GT+TYGGYSD +VV Q YV++FPDN+PLDAGAPLLCAGITVYSPMKYYGMTEP                   GKAFGLKVTVISTSP KE+EAI KLGAD+FLVS DP K+KAAMGTM
Sbjct:    1 MAKSPETELPLKAFGWAARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKPVFTYNS-PYKGTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISTSPNKETEAIDKLGADSFLVSKDPEKMKAAMGTM 247          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 355.525 bits (911), Expect = 1.899e-97
Identity = 166/248 (66.94%), Postives = 192/248 (77.42%), Query Frame = 3
Query:   48 MAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 791
            MAKSPETE P K  GW ARD +G  SPFHFSRR+ G +DVT+KILFCG+CH+DLH  +N+WG + YP+VPGHEIVG  TKVG NV+KFKEGD+VGVGV+  SCQ CESC Q LENYCP M  TYN+I  DGTK YGGYS+ IVVDQ +VLRFP+N+P D+GAPLLCAGITVYSPMKYYGMTE                   IGKAFGLKVTVIS+S  K  EAI+ LGAD+FLV++DP K+KAA+GTM
Sbjct:    1 MAKSPETEHPNKVFGWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKNDWGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQKMKAAIGTM 248          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 6.322e-93
Identity = 161/237 (67.93%), Postives = 187/237 (78.90%), Query Frame = 3
Query:   81 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 791
            KA GWAA+D +G  SPFHF+RR+  ADDVT+KIL+CG+CHSDLH  +N+WG T YP+VPGHEI G VTKVG+NV+KFKEGD+VGVGV+V SCQ+CE CQQ LE+YCP  + TYNS    GT+T GGYSD +VV Q +VL+FPDN+PLDAGAPLLCAGITVYSPMKYYGMTEP                   GKAFGLKVTVIS+SP KESEAI  LGAD+FL+SSDP K+KAA GTM
Sbjct:    5 KAFGWAAKDASGHLSPFHFTRRQNEADDVTLKILYCGVCHSDLHTVKNDWGFTTYPVVPGHEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYNS-PYKGTRTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISSSPNKESEAIDVLGADSFLLSSDPEKMKAATGTM 240          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.688e-88
Identity = 152/238 (63.87%), Postives = 179/238 (75.21%), Query Frame = 3
Query:   81 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMT-EPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 791
            +A GWAA D +G  SPFHFSRRE G +DVT+KILFCG+CHSDLH  +N WG + YPI+PGHEIVG  TKVG NV+KFKEGD+VGVGV++ SCQ CESC Q LENYCP ++ TYNS   DGT+  GGYSD+IVVD  +VL  PD +P D+GAPLLCAGITVYSPMKYYGMT E                   IGKAFGL+VTVIS S +KE EAI +LGAD+FLV++D  K+K A+GTM
Sbjct:    6 RAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTM 243          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.969e-87
Identity = 149/248 (60.08%), Postives = 185/248 (74.60%), Query Frame = 3
Query:   48 MAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 791
            MAKSPETE P KA+GWAA DN+GTFSPF+FSRR TG  DV  ++L+CG+CHSDLH  +NEWGVT+YPIVPGHEIVG VT+VG+ V K K GDKVGVGVLV SC++C+ C   LENYC   ILTY +   DGT   GGYSD++V D+H+++R+P+N PLDAGAPLLCAGIT YSP+KY+G+ +P                    KAFG KVTVISTS  K+ EA+  LG D F+VS+DP +++AA+GT+
Sbjct:    1 MAKSPETEHPVKALGWAATDNSGTFSPFNFSRRATGERDVQFRVLYCGVCHSDLHMVKNEWGVTHYPIVPGHEIVGIVTEVGSKVEKVKIGDKVGVGVLVGSCRQCDQCSNDLENYCYKQILTYGAPYLDGTIARGGYSDIMVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKPGLRVGVNGLGGLGHVAVKFAKAFGTKVTVISTSLSKKEEAMQHLGVDEFVVSTDPQQMQAAVGTL 248          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 5.184e-87
Identity = 153/239 (64.02%), Postives = 179/239 (74.90%), Query Frame = 3
Query:   81 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGT-KTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMT-EPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 791
            KA GWAA D +G  SPFHFSRRE G +DVT+KILFCG+CHSDLH  +N WG + YPI+PGHEIVG  TKVG NV+KFKEGD+VGVGV++ SCQ CESC Q LENYCP ++ TYNS   DGT +  GGYSD+IVVD  +VL  PD +P D+GAPLLCAGITVYSPMKYYGMT E                   IGKAFGL+VTVIS S +KE EAI +LGAD+FLV++D  K+K A+GTM
Sbjct:    6 KAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTM 244          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.508e-86
Identity = 147/245 (60.00%), Postives = 181/245 (73.88%), Query Frame = 3
Query:   57 SPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 791
            +PE   PQKA GWAARD +GT SP  FSRR TG  DVT K+L+CGICHSDLH  +NEWG   YP +PGHEIVG VT+VGN V  FK GDKVGVG +V SC+ CESC+  LENYCP MILTY S   DGT TYGGYSD++VV++H+ +R PDNM LDA APLLCAG+TVYSP+K++ + +P                   GKAFG KVTVISTSP K+ EA+++LGAD+F+VS +P ++++AMGT+
Sbjct:    5 APENVHPQKAFGWAARDTSGTLSPLKFSRRATGEQDVTFKVLYCGICHSDLHYIKNEWGNAVYPAIPGHEIVGVVTEVGNKVQNFKVGDKVGVGCMVGSCRSCESCENHLENYCPKMILTYGSTYYDGTLTYGGYSDIMVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKPGLHIGVVGLGGLGHMAVKFGKAFGAKVTVISTSPNKKDEAVNRLGADSFVVSREPEQMQSAMGTL 249          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.844e-84
Identity = 143/243 (58.85%), Postives = 179/243 (73.66%), Query Frame = 3
Query:   63 ETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 791
            E E  +KA GWAARD++G  SPF+F RRETG  DVT K+L+CGICHSDLH  +NEWG + YP+VPGHEIVG VT+VG+ V KFK GD+VGVG +V SC+ CE+C   LENYCP  ILTY +   DG+ TYGGYSD++V D+H+++R PDN+PLD  APLLCAGIT YSP++Y+G+ +P                    KA G+KVTVISTSPKKE EA+  LGAD+FLVS D  +++AA+GTM
Sbjct:    4 EQEHRKKASGWAARDSSGVLSPFNFYRRETGEKDVTFKVLYCGICHSDLHMVKNEWGFSTYPLVPGHEIVGEVTEVGSKVQKFKVGDRVGVGCIVGSCRSCENCTDHLENYCPKQILTYGAKYYDGSTTYGGYSDIMVADEHFIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPKKEEEALKHLGADSFLVSRDQDQMQAAIGTM 246          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.254e-82
Identity = 143/247 (57.89%), Postives = 179/247 (72.47%), Query Frame = 3
Query:   51 AKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 791
            A S    + Q+A+G AARD++G  SPF  SRR TG DDV IKILFCGICHSDLHC +NEW  + YP+VPGHEI G VT+VG NV++FK GD+VGVG +V SC+ CESC  G EN+CP  + TYNS+D+DGT TYGGYS ++VV + +V+ FP+ MPLD GAPLLCAGITVY+PMKY+G+  P                    +AFGLKVTVIS+SP K+ EA+ +LGADAF+VSS   +++AA  TM
Sbjct:    5 AASAAAGEEQQAVGLAARDSSGHLSPFAISRRSTGDDDVAIKILFCGICHSDLHCIKNEWKHSIYPLVPGHEIAGVVTEVGKNVTRFKAGDRVGVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPGKHVGVLGLGGLGHVAVKFARAFGLKVTVISSSPGKKREALERLGADAFVVSSSAEEMEAARSTM 251          
BLAST of CN182542 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.461e-81
Identity = 144/238 (60.50%), Postives = 174/238 (73.11%), Query Frame = 3
Query:   78 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 791
            ++A G AA+DN+G  SPF F+RRETG  DV  K+LFCGICHSDLH  +NEWG++ YP+VPGHEIVG VT+VG  V+KFK G+KVGVG LV+SC  C+SC +G+ENYCP  I TY     D T TYGGYSD +V ++ +V+R PDN+PLDA APLLCAGITVYSPMKY+G+ +P                    KA G KVTVISTS KK  EAI++LGADAFLVS DP ++K AMGTM
Sbjct:    7 KEAFGLAAKDNSGVLSPFSFTRRETGEKDVRFKVLFCGICHSDLHMVKNEWGMSTYPLVPGHEIVGVVTEVGAKVTKFKTGEKVGVGCLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYDNTITYGGYSDHMVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVKFAKAMGTKVTVISTSEKKRDEAINRLGADAFLVSRDPKQIKDAMGTM 244          
The following BLAST results are available for this feature:
BLAST of CN182542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
MTDH_MEDSA2.397e-10070.16Probable mannitol dehydrogenase OS=Medicago sativa... [more]
CADH9_ARATH1.899e-9766.94Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
MTDH1_STYHU6.322e-9367.93Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CADH3_ARATH4.688e-8863.87Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
GEDH1_OCIBA3.969e-8760.08Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
CADH2_ARATH5.184e-8764.02Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
MTDH_MESCR1.508e-8660.00Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
MTDH_FRAAN1.844e-8458.85Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
CADH3_ORYSJ2.254e-8257.89Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CADH8_ARATH1.461e-8160.50Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002K05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182542 ID=CN182542; Name=CN182542; organism=Citrus sinensis; type=EST; length=793bp
GAGGGTTTAAGTGAGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCATG
GCAAAATCACCAGAAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCTGC
CAGAGACAACACTGGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGAAA
CTGGTGCTGATGATGTAACTATTAAGATCCTCTTTTGTGGGATTTGCCAC
TCGGACTTGCATTGTGCCAGAAATGAATGGGGTGTCACCAATTACCCAAT
TGTTCCCGGGCATGAAATTGTTGGTACTGTGACAAAAGTTGGAAATAACG
TGTCAAAATTCAAAGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAGCC
TCCTGCCAAAAATGTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGTCC
TAATATGATACTTACATATAACTCCATTGATCGTGATGGAACAAAAACTT
ATGGTGGTTACTCAGATCTGATTGTTGTTGATCAGCATTATGTGCTCCGC
TTTCCTGACAACATGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCGGG
GATCACAGTGTACAGCCCAATGAAATATTATGGAATGACTGAGCCAGGCA
AGCATTTGGGTGTAGCAGGACTTGGTGGGCTTGGCCATGTTGCTGTGAAA
ATTGGCAAGGCCTTTGGGTTGAAAGTCACCGTCATCAGTACTTCTCCGAA
AAAAGAGAGTGAAGCGATCAGCAAACTTGGTGCTGATGCATTCCTTGTTT
CCAGTGATCCTGCTAAAGTTAAGGCTGCTATGGGCACTATGGA
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