CN189097

Overview
NameCN189097
Unique NameCN189097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189097 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 89/161 (55.28%), Postives = 111/161 (68.94%), Query Frame = -2
Query:  214 FLPYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDD-EQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTIV 693
            F  Y+ LFLGAYGQD LDF+LEGGT+  WWNDQR+W IRG S HLFG +E+ LK L +S  GFNVTSK  DD EQSK Y +E+ +FG  S MF+ L   AIVN  +F +G   +       EGL L+++LA F ++NC P+YEAMVLR D GK+P +V  V
Sbjct:  577 FWLYIVLFLGAYGQDLLDFVLEGGTYGGWWNDQRMWSIRGFSSHLFGFIEFTLKTLNLSTHGFNVTSKANDDEEQSKRYEKEIFEFGPSSSMFLPLTTVAIVNLLAFVWGLYGLFAW---GEGLVLELMLASFAVVNCLPIYEAMVLRIDDGKLPKRVCFV 734          
BLAST of CN189097 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.927e-40
Identity = 82/158 (51.90%), Postives = 105/158 (66.46%), Query Frame = -2
Query:  223 FLPYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDD-EQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKV 693
            F  Y+ LFLG Y QD  DFLLEGGT+RKWWNDQR+W++RGLS   FG  E+ LK L +S  G+NVTSK  DD EQ K Y QE+ DFG  S MF+ +   AI+N  +F  G   +       EG  L+++LA F ++NC P+YEAMVLR D GK+P ++
Sbjct:  548 FWLYIILFLGGYAQDLSDFLLEGGTYRKWWNDQRMWMVRGLSSFFFGFTEFTLKTLNLSTQGYNVTSKSNDDNEQMKRYEQEIFDFGPSSSMFLPITTVAIMNLLAFMRGLYGIFTW---GEGPVLELMLASFAVVNCLPIYEAMVLRIDDGKLPKRI 702          
BLAST of CN189097 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 81/155 (52.26%), Postives = 104/155 (67.10%), Query Frame = -2
Query:  235 FLPYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKV-VDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMI-CGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKM 693
            F  Y+ LF GAY QD  DFLLEGGT+RKWWNDQR+ +I+GLS   FG +E++LK L +S   FNVTSK   DDEQ K Y QE+ DFG  S MF+ L   AIVN  +F +G   ++ CG +    L L+++L  F ++NC P+Y AMVLR D GK+
Sbjct:  558 FWLYIILFFGAYAQDLSDFLLEGGTYRKWWNDQRMLMIKGLSSFFFGFIEFILKTLNLSTPKFNVTSKANDDDEQRKRYEQEIFDFGTSSSMFLPLTTVAIVNLLAFVWGLYGILFCGGE----LYLELMLVSFAVVNCLPIYGAMVLRKDDGKL 708          
BLAST of CN189097 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.535e-32
Identity = 62/160 (38.75%), Postives = 103/160 (64.38%), Query Frame = -2
Query:  217 FLPYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICG-SDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTI 693
            F+P+ ++ + A      +FL  GGTFR WWN+QR+WL R  S  LFG ++ + K LG+S   F +T+KV ++E ++ Y +E+++FGV SPMF+ L    ++N F F+    +++ G   D + + +Q ++ G +++  WP+Y+ M+LR DKGKMP  VT+
Sbjct:  554 FIPFGYVTVAATAYSLAEFLWCGGTFRGWWNEQRMWLYRRTSSFLFGFMDTIKKLLGVSESAFVITAKVAEEEAAERYKEEVMEFGVESPMFLVLGTLGMLNLFCFAAAVARLVSGDGGDLKTMGMQFVITGVLVVINWPLYKGMLLRQDKGKMPMSVTV 713          
BLAST of CN189097 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 59/157 (37.58%), Postives = 99/157 (63.06%), Query Frame = -2
Query:  217 PYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTI 687
            P++++F         + LL G T + WWN QR+W+++ ++ +L+G ++ + K LG+S   F +T+KV D +++K Y QE+L+FG  SP FV +A  A++NF     G  +++ G   N  LP Q++L G I++   P+YEAM +R DKG++P  VT+
Sbjct:  559 PFIYVFCVKTLYSLYEALLSGDTLKGWWNGQRMWMVKRITSYLYGFIDTIRKLLGLSKMSFEITAKVSDGDEAKRYEQEILEFGSSSPEFVIIATVALLNFVCLVAGLSKIMAGV-WNVFLP-QVILCGLIVITNIPIYEAMFVRKDKGRIPLPVTL 713          
BLAST of CN189097 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 59/160 (36.88%), Postives = 98/160 (61.25%), Query Frame = -2
Query:  217 PYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDD---NEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTI 687
            P++++F         + LL G T + WWN QR+W+++ ++ +L+G ++ + K +G+S   F VT+KV   +++K Y QE+L+FG  SP +V +A  A++NF     G  Q++ G  +   N  LP Q +L G I++   P+YEAM LR D G++PT VT+
Sbjct:  564 PFIYVFCVKTLYGLYEALLSGDTLKGWWNGQRMWMVKSITSYLYGFIDTIRKCVGMSKMSFEVTAKVSGHDEAKRYEQEILEFGSSSPEYVIIATVALLNFVCLVGGLSQIMAGVWNMPWNVFLP-QAILCGMIVIINMPIYEAMFLRKDNGRIPTAVTL 722          
BLAST of CN189097 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.459e-23
Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = -2
Query:  214 FLPYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMIC--GSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTIV 693
            F+P+ ++ + AY     + L  G +  +WWN QR+WLIR ++ +L  T++   + LGIS  GFN+T KV D +  + Y + M++FG  S MFV L   A++N      G  +++   G    E L LQ +L   I+    PVYEA+ LR DKG +P  V  V
Sbjct:  569 FIPFAYVMVAAYSCSLAESLQCGDSAVEWWNAQRMWLIRRITSYLLATIDTFRRILGISESGFNLTVKVTDLQALERYKKGMMEFGSFSAMFVILTTVALLNLACMVLGISRVLLQEGPGGLETLFLQAVLCVLIVAINSPVYEALFLRRDKGSLPASVARV 730          
The following BLAST results are available for this feature:
BLAST of CN189097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CSLG3_ARATH5.699e-4455.28Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLG2_ARATH2.927e-4051.90Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]
CSLG1_ARATH7.970e-3852.26Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLE1_ARATH6.535e-3238.75Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CSLE6_ORYSJ2.176e-2737.58Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLE1_ORYSJ4.103e-2636.88Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLE2_ORYSJ9.459e-2337.04Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189097 ID=CN189097; Name=CN189097; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTTTTTTTTGAAAGTAGAGATGAAATAAATTATTATTTACAAAT
AATGATAAAATGAGTTATTACATCGAACCCTAAATAGCGAAAAGAGCTTC
TTTTTTTTATTATTAATTTTTTTTTTTACCCTCTAAGCAGCTAAGCAAAA
AGTCCTTACTTAGAGAACGAGAAATGATGCTGCAGCATAAAGAGTCCATG
CTAGAAATGCTGCAACAATAGTAACTTTGGTAGGCATCTTTCCTTTATCA
GTTCTCAACACCATGGCTTCATAAACTGGCCAGCAATTCAACATGATGAA
ACCTGCTAGCAACATCTGCAAGGGTAGTCCCTCGTTATCATCGCTGCCGC
AGATCATCTGTAAGAACCCAAAAGAAAATGAGAAAAAGTTAACTATTGCT
GCCACTGCCAGTGTCACAAACATAGGCGATGGCACTCCAAAATCAAGCAT
CTCTTGGCTATATATTTTGCTTTGTTCATCATCAACGACTTTGCTGGTCA
CATTGAATCCAAATGCAGAAATTCCCAAGAACTTGAGTAAGTACTCAAGT
GTTCCAAAAAGGTGACAAGAAAGCCCCCTTATTAGCCATATTCTCTGATC
ATTCCACCATTTTCGAAATGTACCTCCTTCCAATAGGAAATCTAGACAAT
CTTGTCCATAAGCTCCAAGGAAAAGAAATAAGTACGGGAGAAAC
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