CN182520

Overview
NameCN182520
Unique NameCN182520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD_ARATH (Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 5.598e-76
Identity = 141/173 (81.50%), Postives = 154/173 (89.02%), Query Frame = -1
Query:  178 LKDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLR--GGAPPKFSQRTVLITENYQVV 690
            LK P++PFPTGQ GD  GVGLL+WRMQ ADESMVPLTINCWPSVSGNETYVS+EYEAS+MFDL NV+ISVPLPALREAPSVRQ DGEWRYD RNSVLEW+ILLIDNSNRSGSMEFVVPP DSS FFPISV+F+ATSTYS LKV  +IPLR  GGA P+F QRT LI +NYQV+
Sbjct:  357 LKRPDQPFPTGQGGD--GVGLLRWRMQRADESMVPLTINCWPSVSGNETYVSLEYEASSMFDLTNVIISVPLPALREAPSVRQCDGEWRYDPRNSVLEWSILLIDNSNRSGSMEFVVPPVDSSVFFPISVQFAATSTYSGLKVTGMIPLRGGGGATPRFVQRTQLIAQNYQVI 527          
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD2_ORYSJ (Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica GN=Os05g0311000 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.995e-70
Identity = 128/170 (75.29%), Postives = 145/170 (85.29%), Query Frame = -1
Query:  178 KDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 687
            KDPNRPFP+GQ        L+KWR+   DES +PL++NCWPSVSGNETYV+IEYEA+ MFDL NVVIS+PLPALREAPSVRQIDGEWRYDSRNSVLEW+ILLID SNRSGSMEFVVPPAD S+FFPIS+ FSA+ST+SDLKV  I PL+ G PPK+SQR  L+T NYQVV
Sbjct:  358 KDPNRPFPSGQNETP----LVKWRIHGMDESSLPLSVNCWPSVSGNETYVNIEYEAAEMFDLHNVVISIPLPALREAPSVRQIDGEWRYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVTANYQVV 523          
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD1_ORYSJ (Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica GN=Os05g0310800 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.075e-69
Identity = 126/170 (74.12%), Postives = 145/170 (85.29%), Query Frame = -1
Query:  178 KDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 687
            KDPNRPFP+GQ        L+KWR+Q  DES +PL++NCWPSVSG+ETYV+IEYEA+ MFDL NVVIS+PLPALREAPSVRQIDGEW+YDSRNSVLEW+ILLID SNRSGSMEFVVPPAD S+FFPIS+ FSA+ST+SDLKV  I PL+ G PPK+SQR  L+  NYQVV
Sbjct:  359 KDPNRPFPSGQNETP----LVKWRIQGMDESSLPLSVNCWPSVSGSETYVNIEYEAAEMFDLHNVVISIPLPALREAPSVRQIDGEWKYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVAANYQVV 524          
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD3_ORYSJ (Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica GN=Os01g0833700 PE=2 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 5.611e-68
Identity = 125/170 (73.53%), Postives = 143/170 (84.12%), Query Frame = -1
Query:  178 KDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 687
            KDPNRPFP+GQ        L+KWR+Q  +ES +PL +NCWPSVSGNETYV+IEYEAS MFDL NVVIS+PLPALREAP VRQIDGEWRYDSRNSVLEW+I+L+D SNRSGS+EF VP AD S+FFPISV FSA++T+SDLKV  I PLR G+PPKFSQR  L+T NYQVV
Sbjct:  353 KDPNRPFPSGQNETP----LVKWRIQELNESSLPLAVNCWPSVSGNETYVNIEYEASEMFDLHNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAADPSTFFPISVGFSASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 518          
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD4_ORYSJ (Coatomer subunit delta-4 OS=Oryza sativa subsp. japonica GN=Os08g0368000 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.186e-63
Identity = 117/171 (68.42%), Postives = 142/171 (83.04%), Query Frame = -1
Query:  178 KDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGA-PPKFSQRTVLITENYQVV 687
            KDP RPFP+GQ        L+KWR+Q  +ES +PL++NCWPS+ GNETYV+IEYEAS MFDL +V+IS+PLPALREAP VRQIDGEW+YDSRNSVLEW+I+LID SNRSGSMEFVVPPAD S F+PISV FSA++T+S++KV  I PL  G+ PPK+SQR  L+ +NYQVV
Sbjct:  210 KDPIRPFPSGQNETP----LVKWRIQGMNESSLPLSVNCWPSILGNETYVNIEYEASEMFDLHSVIISIPLPALREAPRVRQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFVVPPADPSMFYPISVGFSASNTFSNVKVTGIRPLNEGSNPPKYSQRVRLVADNYQVV 376          
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD_RAT (Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36
Identity = 73/172 (42.44%), Postives = 112/172 (65.12%), Query Frame = -1
Query:  178 LKDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEAST-MFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 690
            LK+P + FP       + VG+LKWR+Q+ +ES +PLTINCWPS SGN   V+IEYE      +L +VVI++PLP+   AP + +IDGE+R+DSR + LEW + +ID  N+SGS+EF + P   + FFP+ V F +   Y +++V  +  + G +P +FS  T  + + Y+++
Sbjct:  346 LKNPEKSFPVN-----SDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-PGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511          
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD_MOUSE (Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36
Identity = 73/172 (42.44%), Postives = 112/172 (65.12%), Query Frame = -1
Query:  178 LKDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEAST-MFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 690
            LK+P + FP       + VG+LKWR+Q+ +ES +PLTINCWPS SGN   V+IEYE      +L +VVI++PLP+   AP + +IDGE+R+DSR + LEW + +ID  N+SGS+EF + P   + FFP+ V F +   Y +++V  +  + G +P +FS  T  + + Y+++
Sbjct:  346 LKNPEKSFPVN-----SDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-PGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511          
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD_CHICK (Coatomer subunit delta OS=Gallus gallus GN=ARCN1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.661e-36
Identity = 72/172 (41.86%), Postives = 111/172 (64.53%), Query Frame = -1
Query:  178 LKDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEAST-MFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 690
            LK+P + FP       + VG+LKWR+Q+ +ES +PLTINCWPS SGN   V+IEYE      +L +VVI +PLP+   AP + +IDGE+R+DSR ++LEW + +ID  N+SGS+EF +     + FFP+ V F +   Y +++V  +  + G +P +FS  T  + + Y+++
Sbjct:  345 LKNPEKSFPIN-----SDVGVLKWRLQTTEESFIPLTINCWPSESGNSCDVNIEYELQEESLELNDVVIMIPLPSGVGAPVIGEIDGEYRHDSRRNLLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 510          
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD_PONAB (Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 72/172 (41.86%), Postives = 111/172 (64.53%), Query Frame = -1
Query:  178 LKDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEAST-MFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 690
            LK+P + FP       + VG+LKWR+Q+ +ES +PLTINCWPS SGN   V+IEYE      +L +VVI++PLP+   AP + +IDGE+R+DSR + LEW + +ID  N+SGS+EF +     + FFP+ V F +   Y +++V  +  + G +P +FS  T  + + Y+++
Sbjct:  346 LKNPEKSFPVN-----SDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511          
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD_HUMAN (Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 72/172 (41.86%), Postives = 111/172 (64.53%), Query Frame = -1
Query:  178 LKDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEAST-MFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 690
            LK+P + FP       + VG+LKWR+Q+ +ES +PLTINCWPS SGN   V+IEYE      +L +VVI++PLP+   AP + +IDGE+R+DSR + LEW + +ID  N+SGS+EF +     + FFP+ V F +   Y +++V  +  + G +P +FS  T  + + Y+++
Sbjct:  346 LKNPEKSFPVN-----SDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511          
The following BLAST results are available for this feature:
BLAST of CN182520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COPD_ARATH5.598e-7681.50Coatomer subunit delta OS=Arabidopsis thaliana GN=... [more]
COPD2_ORYSJ5.995e-7075.29Coatomer subunit delta-2 OS=Oryza sativa subsp. ja... [more]
COPD1_ORYSJ5.075e-6974.12Coatomer subunit delta-1 OS=Oryza sativa subsp. ja... [more]
COPD3_ORYSJ5.611e-6873.53Coatomer subunit delta-3 OS=Oryza sativa subsp. ja... [more]
COPD4_ORYSJ3.186e-6368.42Coatomer subunit delta-4 OS=Oryza sativa subsp. ja... [more]
COPD_RAT1.490e-3642.44Coatomer subunit delta OS=Rattus norvegicus GN=Arc... [more]
COPD_MOUSE1.490e-3642.44Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE... [more]
COPD_CHICK9.661e-3641.86Coatomer subunit delta OS=Gallus gallus GN=ARCN1 P... [more]
COPD_PONAB1.262e-3541.86Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE... [more]
COPD_HUMAN1.262e-3541.86Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002J15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182520 ID=CN182520; Name=CN182520; organism=Citrus sinensis; type=EST; length=690bp
GATTTATAATAGAAGAAAATTAGGTCAATAAAATCAAAATCTCAAAACTT
TTAGGATAAGAAATGAAAATGAGGAAAAAAAAGATTTCGCTAATAGTCAA
ACTCCCCATACAACTGAAAACATCATCTAAGAATGCCAATAGAAACTTGT
TATCTGATGCGTCTTTTCCATCAGCTACACAACTTGGTAATTTTCTGTGA
TCAAAACTGTCCTCTGAGAAAATTTGGGAGGAGCTCCACCTCTTAAAGGG
ATGATATTTACAACCTTTAGATCACTGTAAGTACTTGTAGCTGAAAATCG
CACAGAAATAGGGAAGAAAGATGATGAATCAGCAGGAGGCACAACAAATT
CCATTGAGCCACTGCGGTTAGAGTTATCAATAAGAAGTATGGTCCATTCC
AGGACAGAATTTCTTGAGTCATACCTCCACTCCCCATCAATCTGCCTAAC
ACTTGGTGCCTCTCGGAGAGCTGGAAGAGGAACTGAGATCACTACATTTC
GCAGATCAAACATTGTTGAAGCTTCATATTCGATGCTCACATAAGTTTCA
TTTCCAGAAACAGAGGGCCAGCAGTTGATTGTCAATGGCACCATAGACTC
ATCTGCACTTTGCATCCTCCACTTCAAAAGACCAACACCAGCTGCATCAC
CAGCTTGGCCTGTGGGGAAAGGCCTGTTAGGATCCTTCAA
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