CN182520
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD_ARATH (Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2) HSP 1 Score: 283.878 bits (725), Expect = 5.598e-76 Identity = 141/173 (81.50%), Postives = 154/173 (89.02%), Query Frame = -1 Query: 178 LKDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLR--GGAPPKFSQRTVLITENYQVV 690 LK P++PFPTGQ GD GVGLL+WRMQ ADESMVPLTINCWPSVSGNETYVS+EYEAS+MFDL NV+ISVPLPALREAPSVRQ DGEWRYD RNSVLEW+ILLIDNSNRSGSMEFVVPP DSS FFPISV+F+ATSTYS LKV +IPLR GGA P+F QRT LI +NYQV+ Sbjct: 357 LKRPDQPFPTGQGGD--GVGLLRWRMQRADESMVPLTINCWPSVSGNETYVSLEYEASSMFDLTNVIISVPLPALREAPSVRQCDGEWRYDPRNSVLEWSILLIDNSNRSGSMEFVVPPVDSSVFFPISVQFAATSTYSGLKVTGMIPLRGGGGATPRFVQRTQLIAQNYQVI 527
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD2_ORYSJ (Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica GN=Os05g0311000 PE=2 SV=1) HSP 1 Score: 263.848 bits (673), Expect = 5.995e-70 Identity = 128/170 (75.29%), Postives = 145/170 (85.29%), Query Frame = -1 Query: 178 KDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 687 KDPNRPFP+GQ L+KWR+ DES +PL++NCWPSVSGNETYV+IEYEA+ MFDL NVVIS+PLPALREAPSVRQIDGEWRYDSRNSVLEW+ILLID SNRSGSMEFVVPPAD S+FFPIS+ FSA+ST+SDLKV I PL+ G PPK+SQR L+T NYQVV Sbjct: 358 KDPNRPFPSGQNETP----LVKWRIHGMDESSLPLSVNCWPSVSGNETYVNIEYEAAEMFDLHNVVISIPLPALREAPSVRQIDGEWRYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVTANYQVV 523
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD1_ORYSJ (Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica GN=Os05g0310800 PE=2 SV=1) HSP 1 Score: 260.766 bits (665), Expect = 5.075e-69 Identity = 126/170 (74.12%), Postives = 145/170 (85.29%), Query Frame = -1 Query: 178 KDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 687 KDPNRPFP+GQ L+KWR+Q DES +PL++NCWPSVSG+ETYV+IEYEA+ MFDL NVVIS+PLPALREAPSVRQIDGEW+YDSRNSVLEW+ILLID SNRSGSMEFVVPPAD S+FFPIS+ FSA+ST+SDLKV I PL+ G PPK+SQR L+ NYQVV Sbjct: 359 KDPNRPFPSGQNETP----LVKWRIQGMDESSLPLSVNCWPSVSGSETYVNIEYEAAEMFDLHNVVISIPLPALREAPSVRQIDGEWKYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVAANYQVV 524
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD3_ORYSJ (Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica GN=Os01g0833700 PE=2 SV=2) HSP 1 Score: 257.299 bits (656), Expect = 5.611e-68 Identity = 125/170 (73.53%), Postives = 143/170 (84.12%), Query Frame = -1 Query: 178 KDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 687 KDPNRPFP+GQ L+KWR+Q +ES +PL +NCWPSVSGNETYV+IEYEAS MFDL NVVIS+PLPALREAP VRQIDGEWRYDSRNSVLEW+I+L+D SNRSGS+EF VP AD S+FFPISV FSA++T+SDLKV I PLR G+PPKFSQR L+T NYQVV Sbjct: 353 KDPNRPFPSGQNETP----LVKWRIQELNESSLPLAVNCWPSVSGNETYVNIEYEASEMFDLHNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAADPSTFFPISVGFSASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 518
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD4_ORYSJ (Coatomer subunit delta-4 OS=Oryza sativa subsp. japonica GN=Os08g0368000 PE=2 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 3.186e-63 Identity = 117/171 (68.42%), Postives = 142/171 (83.04%), Query Frame = -1 Query: 178 KDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGA-PPKFSQRTVLITENYQVV 687 KDP RPFP+GQ L+KWR+Q +ES +PL++NCWPS+ GNETYV+IEYEAS MFDL +V+IS+PLPALREAP VRQIDGEW+YDSRNSVLEW+I+LID SNRSGSMEFVVPPAD S F+PISV FSA++T+S++KV I PL G+ PPK+SQR L+ +NYQVV Sbjct: 210 KDPIRPFPSGQNETP----LVKWRIQGMNESSLPLSVNCWPSILGNETYVNIEYEASEMFDLHSVIISIPLPALREAPRVRQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFVVPPADPSMFYPISVGFSASNTFSNVKVTGIRPLNEGSNPPKYSQRVRLVADNYQVV 376
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD_RAT (Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36 Identity = 73/172 (42.44%), Postives = 112/172 (65.12%), Query Frame = -1 Query: 178 LKDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEAST-MFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 690 LK+P + FP + VG+LKWR+Q+ +ES +PLTINCWPS SGN V+IEYE +L +VVI++PLP+ AP + +IDGE+R+DSR + LEW + +ID N+SGS+EF + P + FFP+ V F + Y +++V + + G +P +FS T + + Y+++ Sbjct: 346 LKNPEKSFPVN-----SDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-PGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD_MOUSE (Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36 Identity = 73/172 (42.44%), Postives = 112/172 (65.12%), Query Frame = -1 Query: 178 LKDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEAST-MFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 690 LK+P + FP + VG+LKWR+Q+ +ES +PLTINCWPS SGN V+IEYE +L +VVI++PLP+ AP + +IDGE+R+DSR + LEW + +ID N+SGS+EF + P + FFP+ V F + Y +++V + + G +P +FS T + + Y+++ Sbjct: 346 LKNPEKSFPVN-----SDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-PGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD_CHICK (Coatomer subunit delta OS=Gallus gallus GN=ARCN1 PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 9.661e-36 Identity = 72/172 (41.86%), Postives = 111/172 (64.53%), Query Frame = -1 Query: 178 LKDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEAST-MFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 690 LK+P + FP + VG+LKWR+Q+ +ES +PLTINCWPS SGN V+IEYE +L +VVI +PLP+ AP + +IDGE+R+DSR ++LEW + +ID N+SGS+EF + + FFP+ V F + Y +++V + + G +P +FS T + + Y+++ Sbjct: 345 LKNPEKSFPIN-----SDVGVLKWRLQTTEESFIPLTINCWPSESGNSCDVNIEYELQEESLELNDVVIMIPLPSGVGAPVIGEIDGEYRHDSRRNLLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 510
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD_PONAB (Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35 Identity = 72/172 (41.86%), Postives = 111/172 (64.53%), Query Frame = -1 Query: 178 LKDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEAST-MFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 690 LK+P + FP + VG+LKWR+Q+ +ES +PLTINCWPS SGN V+IEYE +L +VVI++PLP+ AP + +IDGE+R+DSR + LEW + +ID N+SGS+EF + + FFP+ V F + Y +++V + + G +P +FS T + + Y+++ Sbjct: 346 LKNPEKSFPVN-----SDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
BLAST of CN182520 vs. ExPASy Swiss-Prot
Match: COPD_HUMAN (Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35 Identity = 72/172 (41.86%), Postives = 111/172 (64.53%), Query Frame = -1 Query: 178 LKDPNRPFPTGQAGDAAGVGLLKWRMQSADESMVPLTINCWPSVSGNETYVSIEYEAST-MFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 690 LK+P + FP + VG+LKWR+Q+ +ES +PLTINCWPS SGN V+IEYE +L +VVI++PLP+ AP + +IDGE+R+DSR + LEW + +ID N+SGS+EF + + FFP+ V F + Y +++V + + G +P +FS T + + Y+++ Sbjct: 346 LKNPEKSFPVN-----SDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511 The following BLAST results are available for this feature:
BLAST of CN182520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CN182520 ID=CN182520; Name=CN182520; organism=Citrus sinensis; type=EST; length=690bpback to top |