CN182517

Overview
NameCN182517
Unique NameCN182517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182517 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.296e-17
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = -2
Query:  176 LRVFNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 358
            +R  N+AA TT DRQ+ CNCLK+A  SI+ LNLNLA+GLP +CGV++PY+ISPS DC  V+
Sbjct:   31 VRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CN182517 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.989e-16
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = -2
Query:  176 LRVFNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 358
            +R  NSAA TTPDRQ+ CNCLK+AAGSI  LN N A+ LP +C VNIPY+IS S +C+ +R
Sbjct:   55 VRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CN182517 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.989e-16
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  176 LRVFNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 358
            ++  NSAA TTP RQ+ C C+K+AA  I  +N  LASGLP +CGVNIPY+ISPS DC+ V+
Sbjct:   60 IKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CN182517 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.989e-16
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  176 LRVFNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 358
            ++  NSAA TTP RQ+ C C+K+AA  I  +N  LASGLP +CGVNIPY+ISPS DC+ V+
Sbjct:   56 IKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CN182517 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.305e-15
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = -2
Query:  179 LRVFNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 358
            +R  NSAATTT DR++ CNCLK  AGSI  LN   A+ +P +CGV+IPY ISPS+DCS V
Sbjct:   57 VRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CN182517 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.796e-15
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = -2
Query:  176 SAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 343
            +AA TTPDRQ+ CNCLK+AAGSI  LN N A+ LP +CGVNIPY+IS S +C+ V+
Sbjct:   54 AAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CN182517 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.796e-15
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = -2
Query:  179 LRVFNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 358
            +R  NSAA+TT DR++ CNCLK  AGSI  LN   A+ +P +CGV+IPY ISPS+DCS V
Sbjct:   58 VRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CN182517 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.796e-15
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = -2
Query:  179 LRVFNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 358
            +R  NSAA+TT DR++ CNCLK  AGSI  LN   A+ +P +CGV+IPY ISPS+DCS V
Sbjct:   58 VRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CN182517 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.456e-15
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = -2
Query:  179 LRVFNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 358
            ++  N+AA TTPDR++ CNCLK+AA +I+ +N   A+GLP  CGV+IPY ISPS +C+ V
Sbjct:   57 IKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CN182517 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.456e-15
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = -2
Query:  179 LRVFNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 358
            +R  N+AA TT D+++ C CLK  A ++  LNLN A+GLP +CGVNIPY+ISP+ DC+RV
Sbjct:   60 VRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
The following BLAST results are available for this feature:
BLAST of CN182517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
LTP1_MORNI5.296e-1762.30Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_CICAR9.989e-1662.30Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP2_GOSHI9.989e-1659.02Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI9.989e-1659.02Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLT2B_ORYSJ1.305e-1561.67Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLTP4_LENCU3.796e-1564.29Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP2_ORYSI3.796e-1560.00Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2A_ORYSJ3.796e-1560.00Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP_SPIOL8.456e-1555.00Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_DAUCA8.456e-1556.67Non-specific lipid-transfer protein OS=Daucus caro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002J12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002J12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182517 ID=CN182517; Name=CN182517; organism=Citrus sinensis; type=EST; length=422bp
TGAGAATCGTGGCAAGGGACTCGGTGGATGACACTCTGGTACATATATGA
TAGATGCATAGTACTAATACTCTCTTGACCTAGGAGAGTCCATATCACCC
ACTTTATTATTCCATTTTATATTCATATTATATATAATAATACTTCAGCA
TATATTCTCTTTTCCAAGATCTTCATCTCACTCTGCTGCAGTCAACGGAT
GGGCTGATTTGGTAAGGAATGTTGACGCCACACTGGCGTGGGAGGCCAGA
AGCGAGGTTGAGGTTGAGGTTTCTGATGGAGCCAGCAGCGGTTTTCAAGC
AGTTGCAAACGCTCTGGCGGTCGGGTGTGGTGGTGGCTGCGGAGTTAAAG
ACTCTTAAATCCGCTACAGCAGGCTGGCGGCACAGCGCCTCCACCGGGGC
CCGTCACATATGGCATGCACGC
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