CN182498

Overview
NameCN182498
Unique NameCN182498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182498 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.424e-17
Identity = 46/72 (63.89%), Postives = 53/72 (73.61%), Query Frame = -3
Query:  555 DDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNGEGIDAKEVKQPL-PLASNAEN 767
            D+E DMMLVGDDPWQEFC MVRKIFIYTKEEV KMN  +LS + E+  + GEG DAK+ K    P  S+A N
Sbjct:  787 DEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNPGTLSCRSEEEAVVGEGSDAKDAKSASNPSLSSAGN 858          
BLAST of CN182498 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.924e-14
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = -3
Query:  555 DDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNGEGIDAKEVKQPLPLASNAEN 767
            D+EGDMMLVGDDPW+EFC +VRKI+IYTKEEV KMNS S + + +DS  N +G         LP+ + ++N
Sbjct:  746 DNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDDSSENEKG--------HLPMPNKSDN 808          
BLAST of CN182498 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = -3
Query:  555 DDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNG--EGIDAKEVKQPLPLAS-NAEN 767
            D+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN  +L+S+ EDS  N    G   +E++  L  +S N+EN
Sbjct:  779 DNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852          
BLAST of CN182498 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = -3
Query:  555 DDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNG--EGIDAKEVKQPLPLAS-NAEN 767
            D+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN  +L+S+ EDS  N    G   +E++  L  +S N+EN
Sbjct:  779 DNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852          
BLAST of CN182498 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.599e-14
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = -3
Query:  627 DDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDS 767
            D+EGDMMLVGDDPW EFC MV KIFIYT+EEV KMN  +L+S+ EDS
Sbjct:  767 DNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGALNSRSEDS 813          
BLAST of CN182498 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = -3
Query:  660 DDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 767
            DDE DMM+VGDDPW EFCGMVRKIFIYT EEV K++
Sbjct:  596 DDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLS 631          
The following BLAST results are available for this feature:
BLAST of CN182498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ARFB_ARATH1.424e-1763.89Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFD_ORYSJ1.924e-1454.93Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFW_ORYSJ3.282e-1456.76Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI3.282e-1456.76Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFX_ORYSJ5.599e-1474.47Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFA_ARATH7.567e-1180.56Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002I24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182498 ID=CN182498; Name=CN182498; organism=Citrus sinensis; type=EST; length=769bp
TTTATTCATGGAGAGACAGTCATGTAGTTTGTCCTTCAATTGCCTCACTA
TTACCAGTTACATGAAGATATACGTATATATAGCAACACAACATAAACTA
ATAGATTCTACTATCTTGTGACTATTTTGCAAAGACTTACAAAGTCATTA
GCCCTTACTACACCTGCTAAAAATCCTAGTGAATGGAGATCCGCGAACAG
AAAACCAACAAAACAAACATATGCTTGTAGGCTTTCCCAAGAAGGCACCA
GAGGATGTATAAAACTTAGGCTACTTACATTAAGAGGTTGGAAAAGAGGG
GTAAACAACTATGTACAAAAAGGGATCGTTCGGGAAAGCAAAAGCTAGAA
TTGCCATGCTCAAAATAGGGGGTATACATATTGAATGTATTATATGAGTC
GGACACAATATACCATGCCCCAAATTGGATAGTCATGCCGTCTACGAGGA
GGATTGACATCCATCTATTAGTTCATAATCCAAAATAGAATGCCCTGAAT
ATCTTCTTTCTGATGCTGCAACAAAACCTTGAACCATCAAAACCACACCT
AAAAATTCTCTGCATTAGATGCTAAAGGAAGTGGCTGTTTCACTTCTTTT
GCATCAATGCCTTCCCCATTCATTGGACTATCCTCACCCTTCGAGCTTAA
AGACACTGAGTTCATCTTCAGGACCTCCTCTTTTGTGTAGATGAAAATTT
TGCGTACCATACCACAAAACTCCTGCCATGGATCATCTCCAACAAGCATC
ATGTCACCCTCATCATCAG
back to top