CN182498
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN182498 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.424e-17 Identity = 46/72 (63.89%), Postives = 53/72 (73.61%), Query Frame = -3 Query: 555 DDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNGEGIDAKEVKQPL-PLASNAEN 767 D+E DMMLVGDDPWQEFC MVRKIFIYTKEEV KMN +LS + E+ + GEG DAK+ K P S+A N Sbjct: 787 DEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNPGTLSCRSEEEAVVGEGSDAKDAKSASNPSLSSAGN 858
BLAST of CN182498 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.924e-14 Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = -3 Query: 555 DDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNGEGIDAKEVKQPLPLASNAEN 767 D+EGDMMLVGDDPW+EFC +VRKI+IYTKEEV KMNS S + + +DS N +G LP+ + ++N Sbjct: 746 DNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDDSSENEKG--------HLPMPNKSDN 808
BLAST of CN182498 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14 Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = -3 Query: 555 DDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNG--EGIDAKEVKQPLPLAS-NAEN 767 D+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN +L+S+ EDS N G +E++ L +S N+EN Sbjct: 779 DNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852
BLAST of CN182498 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14 Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = -3 Query: 555 DDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNG--EGIDAKEVKQPLPLAS-NAEN 767 D+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN +L+S+ EDS N G +E++ L +S N+EN Sbjct: 779 DNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852
BLAST of CN182498 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.599e-14 Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = -3 Query: 627 DDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDS 767 D+EGDMMLVGDDPW EFC MV KIFIYT+EEV KMN +L+S+ EDS Sbjct: 767 DNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGALNSRSEDS 813
BLAST of CN182498 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11 Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = -3 Query: 660 DDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 767 DDE DMM+VGDDPW EFCGMVRKIFIYT EEV K++ Sbjct: 596 DDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLS 631 The following BLAST results are available for this feature:
BLAST of CN182498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN182498 ID=CN182498; Name=CN182498; organism=Citrus sinensis; type=EST; length=769bpback to top |