CN182496

Overview
NameCN182496
Unique NameCN182496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182496 vs. ExPASy Swiss-Prot
Match: VATD_ARATH (V-type proton ATPase subunit D OS=Arabidopsis thaliana GN=VHA-D PE=1 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 1.398e-70
Identity = 134/170 (78.82%), Postives = 154/170 (90.59%), Query Frame = -1
Query:  244 ASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLAASKQFVEEQFAEKVSLQKGISIKSAQNLLSAG-EKDEDIIF 750
            A++KVRSR ENIAGVK+PKF++F++GETKNDLTGLARGGQQV+ CR AYVKAIE+LVELASLQTSFLTLDEAIKTTNRRVNALENVVKP+LENTI+YIKGELDELEREDFFRLKKIQGYK+RE+ERQ A +K+F EE   E +S+Q+GISI +A+N L  G EKD DIIF
Sbjct:   92 ATLKVRSRTENIAGVKLPKFDHFSEGETKNDLTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPKLENTISYIKGELDELEREDFFRLKKIQGYKRREVERQAANAKEFAEEMVLEDISMQRGISINAARNFLVGGAEKDSDIIF 261          
BLAST of CN182496 vs. ExPASy Swiss-Prot
Match: VATD1_DROME (V-type proton ATPase subunit D 1 OS=Drosophila melanogaster GN=Vha36 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.667e-39
Identity = 87/169 (51.48%), Postives = 119/169 (70.41%), Query Frame = -1
Query:  244 ASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLAASKQFVEEQFAEKVSLQKGISIKSAQNLLSAGEKDEDIIF 750
            A IK+R++++N+AGV +P FE + DG    +L GLARGGQQ+ + +  Y  A++LLVELASLQTSF+TLDE IK TNRRVNA+E+V+ PR++ T+ YI  ELDELERE+F+RLKKIQ  KKRE   +  A K  +         LQ+GI ++   N+L  G  D+D++F
Sbjct:   90 AQIKIRTKKDNVAGVTLPVFESYQDGSDTYELAGLARGGQQLAKLKKNYQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRIDRTLAYIISELDELEREEFYRLKKIQD-KKREARIKADAKKAEL---------LQQGIDVRQQANILDEG--DDDVLF 246          
BLAST of CN182496 vs. ExPASy Swiss-Prot
Match: VATD_MOUSE (V-type proton ATPase subunit D OS=Mus musculus GN=Atp6v1d PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.177e-39
Identity = 86/170 (50.59%), Postives = 121/170 (71.18%), Query Frame = -1
Query:  244 ASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLAASKQFVEEQFAEKVSLQKGI-SIKSAQNLLSAGEKDEDIIF 750
            A +K+R++++N+AGV +P FE++ +G    +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVNA+E+V+ PR+E T+ YI  ELDE ERE+F+RLKKIQ  KK             ++E+F + +  ++    +    NLL A EKDED++F
Sbjct:   90 AQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKK------------IIKEKFEKDLERRRAAGEVMEPANLL-AEEKDEDLLF 246          
BLAST of CN182496 vs. ExPASy Swiss-Prot
Match: VATD_PONAB (V-type proton ATPase subunit D OS=Pongo abelii GN=ATP6V1D PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.274e-39
Identity = 89/169 (52.66%), Postives = 123/169 (72.78%), Query Frame = -1
Query:  244 ASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLAASKQFVEEQFAEKVSLQKGISIKSAQNLLSAGEKDEDIIF 750
            A +K+R++++N+AGV +P FE++ +G    +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVNA+E+V+ PR+E T+ YI  ELDE ERE+F+RLKKIQ  KK   E+    S++ +E++ A    L+         NLL A EKDED++F
Sbjct:   90 AQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKILKEK----SEKDLEQRRAAGEVLEPA-------NLL-AEEKDEDLLF 246          
BLAST of CN182496 vs. ExPASy Swiss-Prot
Match: VATD_HUMAN (V-type proton ATPase subunit D OS=Homo sapiens GN=ATP6V1D PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.274e-39
Identity = 89/169 (52.66%), Postives = 123/169 (72.78%), Query Frame = -1
Query:  244 ASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLAASKQFVEEQFAEKVSLQKGISIKSAQNLLSAGEKDEDIIF 750
            A +K+R++++N+AGV +P FE++ +G    +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVNA+E+V+ PR+E T+ YI  ELDE ERE+F+RLKKIQ  KK   E+    S++ +E++ A    L+         NLL A EKDED++F
Sbjct:   90 AQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKILKEK----SEKDLEQRRAAGEVLEPA-------NLL-AEEKDEDLLF 246          
BLAST of CN182496 vs. ExPASy Swiss-Prot
Match: VATD_RABIT (V-type proton ATPase subunit D OS=Oryctolagus cuniculus GN=ATP6V1D PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.081e-38
Identity = 88/169 (52.07%), Postives = 122/169 (72.19%), Query Frame = -1
Query:  244 ASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLAASKQFVEEQFAEKVSLQKGISIKSAQNLLSAGEKDEDIIF 750
            A +K+R++++N+AGV +P FE++ +G    +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVNA+E+V+ PR+E T+ YI  ELDE ERE+F+RLKKIQ  KK   E+    S++ +E++ A          +    NLL A EKDED++F
Sbjct:   90 AQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKILKEK----SEKDLEQRRAAG-------EVMEPANLL-AEEKDEDLLF 246          
BLAST of CN182496 vs. ExPASy Swiss-Prot
Match: VATD_MANSE (V-type proton ATPase subunit D OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.363e-38
Identity = 87/169 (51.48%), Postives = 117/169 (69.23%), Query Frame = -1
Query:  244 ASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLAASKQFVEEQFAEKVSLQKGISIKSAQNLLSAGEKDEDIIF 750
            A IK+RS+++N+AGV +P FE + DG    +L GLARGGQQ+ + +  +  A++LLVELASLQTSF+TLDE IK TNRRVNA+E+V+ PRLE T+ YI  ELDELERE+F+RLKKIQ  KK+ I+ +  A K  +            G  ++ + NLL  G  DED++F
Sbjct:   90 AQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELEREEFYRLKKIQD-KKKIIKDKAEAKKAALR---------AAGQDLRDSANLLDEG--DEDLLF 246          
BLAST of CN182496 vs. ExPASy Swiss-Prot
Match: VATD_BOVIN (V-type proton ATPase subunit D OS=Bos taurus GN=ATP6V1D PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.363e-38
Identity = 89/169 (52.66%), Postives = 122/169 (72.19%), Query Frame = -1
Query:  244 ASIKVRSRQENIAGVKIPKFEYFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLAASKQFVEEQFAEKVSLQKGISIKSAQNLLSAGEKDEDIIF 750
            A +K+R++++N+AGV +P FE++ +G    +LTGLARGG+Q+ + +  Y KA+ELLVELASLQTSF+TLDEAIK TNRRVN +E+V+ PR+E T+ YI  ELDE ERE+F+RLKKIQ  KK   E+   + K   + + A +V       I+ A NLL A EKDED++F
Sbjct:   90 AQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNRIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKILKEK---SDKDLEQRRAAGEV-------IEPA-NLL-AEEKDEDLLF 246          
BLAST of CN182496 vs. ExPASy Swiss-Prot
Match: VATD_NEUCR (V-type proton ATPase subunit D OS=Neurospora crassa GN=vma-8 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 7.004e-38
Identity = 83/173 (47.98%), Postives = 115/173 (66.47%), Query Frame = -1
Query:  244 ASIKVRSRQENIAGVKIPKFE-YFTDGETKNDLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKR---EIERQLAASKQFVEEQFAEKVSLQKGISIKSAQNLLSAGEKDEDIIF 750
            A  ++R++QEN++GV +P FE Y  +G     +TGL +GGQQVQ+CR  Y +A+E LVELASLQT+F+ LDE IK  NRRVNA+E+V+ PR ENTI YI  ELDEL+RE+F+RLKK+   K+R   E + Q+ A K   +          +G   ++    + A E+DED+IF
Sbjct:   92 ARFRIRAKQENVSGVLLPAFEAYQAEGNDDFAMTGLGKGGQQVQRCRETYARAVEALVELASLQTAFVILDEVIKVVNRRVNAIEHVIIPRTENTIKYINSELDELDREEFYRLKKVAAKKQRDNAETDAQMKAKKAEQQRLALADSENAEGEQTENTPADILAAEEDEDVIF 264          
BLAST of CN182496 vs. ExPASy Swiss-Prot
Match: VATD_DICDI (V-type proton ATPase subunit D OS=Dictyostelium discoideum GN=atp6v1d PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.148e-38
Identity = 78/170 (45.88%), Postives = 123/170 (72.35%), Query Frame = -1
Query:  244 SIKVRSRQENIAGVKIPKFEYFTDGETKN--DLTGLARGGQQVQQCRAAYVKAIELLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTITYIKGELDELEREDFFRLKKIQGYKKREIERQLAASKQFVEEQFAEKVSLQKGISIKSAQNLLSAGEKDEDIIF 747
            +I V+   EN+AGV +P FE  ++G   N  +LTGL++GGQQ+ + R +++KA+E L+ LASLQT+F+TLDE IK TNRRVNA+E VVKP+LENTI+YI  ELDE ERE+F+RLKK+QG KK++++     +K+  +E+ +   ++ +  S+   ++L+    +D ++++
Sbjct:   91 TIAVKMTTENVAGVHLPTFEKISEGVVSNSQELTGLSKGGQQINKSRESHIKAVEALIALASLQTAFITLDEVIKITNRRVNAIEYVVKPKLENTISYIITELDESEREEFYRLKKVQGKKKKDLK-----AKEAQKEENSANKTIMEPASVHKVRSLIDDEPEDAELLY 255          
The following BLAST results are available for this feature:
BLAST of CN182496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
VATD_ARATH1.398e-7078.82V-type proton ATPase subunit D OS=Arabidopsis thal... [more]
VATD1_DROME1.667e-3951.48V-type proton ATPase subunit D 1 OS=Drosophila mel... [more]
VATD_MOUSE2.177e-3950.59V-type proton ATPase subunit D OS=Mus musculus GN=... [more]
VATD_PONAB8.274e-3952.66V-type proton ATPase subunit D OS=Pongo abelii GN=... [more]
VATD_HUMAN8.274e-3952.66V-type proton ATPase subunit D OS=Homo sapiens GN=... [more]
VATD_RABIT1.081e-3852.07V-type proton ATPase subunit D OS=Oryctolagus cuni... [more]
VATD_MANSE5.363e-3851.48V-type proton ATPase subunit D OS=Manduca sexta PE... [more]
VATD_BOVIN5.363e-3852.66V-type proton ATPase subunit D OS=Bos taurus GN=AT... [more]
VATD_NEUCR7.004e-3847.98V-type proton ATPase subunit D OS=Neurospora crass... [more]
VATD_DICDI9.148e-3845.88V-type proton ATPase subunit D OS=Dictyostelium di... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002I21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182496 ID=CN182496; Name=CN182496; organism=Citrus sinensis; type=EST; length=750bp
TACTGCAGTGATCAACCAAAAGCCATTTTGGCAACAAATATCTTTCAGTT
GAAAGTCTGATACATCGATTAATTAATACACAATAAATAGAATTATACAA
AGAGCTCTTTATTTGAAAAATTAAACAGTCCTCTTCTGAGAAATATTAAT
AATAATAATAATATGAATCTTCCACCAGAAACCAAGCAGCATAATCAAAG
CAACACATCCTACGAAAGTGTGCATAAACCAACCGCCACATCAGAAAATA
ATATCCTCATCCTTTTCCCCTGCAGATAACAAGTTCTGAGCAGACTTAAT
TGAAATTCCTTTCTGCAAAGATACCTTCTCGGCAAACTGCTCCTCAACAA
ACTGCTTGGAAGCAGCAAGCTGTCTCTCGATTTCCCTCTTCTTATATCCT
TGAATCTTCTTCAAGCGAAAGAAATCCTCTCTTTCAAGCTCATCCAACTC
CCCCTTAATGTAAGTGATAGTATTCTCCAATCTAGGCTTGACTACATTCT
CCAAAGCATTAACCCTGCGGTTTGTGGTCTTAATCGCCTCATCCAGTGTC
AAAAATGAAGTTTGAAGAGAAGCAAGCTCGACAAGAAGCTCAATGGCTTT
CACATAAGCAGCACGACACTGTTGCACTTGTTGCCCACCTCTAGCCAATC
CTGTAAGATCATTCTTGGTCTCGCCATCAGTGAAGTACTCAAACTTTGGA
ATCTTAACACCTGCAATATTCTCTTGACGGGATCGAACTTTAATAGAAGC
back to top