CN189076

Overview
NameCN189076
Unique NameCN189076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:58..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189076 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 60/150 (40.00%), Postives = 87/150 (58.00%), Query Frame = 1 
Query:   34 MLAIFHKAFANPPEELHSPASQKCSKRPKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 483
            MLA+F ++   PP EL  P +    K  K  E+    F +   D+TF   F    +       +PL    R     +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQP--RSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CN189076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC2.828e-2540.00Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189076 ID=CN189076; Name=CN189076; organism=Citrus sinensis; type=EST; length=722bp
GAGGCTCAAGAAAGGAAATTTTGTTATAAAGATATGTTGGCGATATTTCA
CAAGGCGTTTGCCAATCCGCCTGAGGAGCTTCATAGCCCTGCGTCTCAAA
AATGTTCGAAGAGGCCTAAACTCCCTGAGGATACCCTCAGTGACTTCCTC
TCCCGTCACTCTGATAACACTTTCTCCATGAACTTTGGCCATGCTGCTGT
TCTTGCTTACGTTCCCCCTCACTCCCCTTTAACCAAGGACCGAAGGTTGT
TTTGCGGGTTTGAGGACATATACTGTCTGTTCATGGGGTCCTTGAACAAC
TTGTGCTCGCTGATCAGGCAATATGGGTTGTCAAAGGGAACCGATGAGGC
CATGTTTGTGATAGAGGCGTATCGTACGCTCAGAGACCGGGGTCCTTACC
CAGCTGATCAGGTTGTCAAGGATCTTGATGGGAGCTTTGCTTTTGTGGTC
TACGATAGCAAGGCCGGCACGGTCTTCACTGCTCTGGGTTCTGATGGGGG
AGTGAAGCTGTACTGGGGAATTGCAGCCGATGGATCTGTGGTCATATCTG
ATGACTTGGAGGTCATCAAAGAGGGATGTGCCAAGTCATTTGCTCCCTTC
CCACAGGGGTGCATGTTCCACAGTGAAGGAGGATTGATGAGCTTTGAGCA
TCCAATGAACAAGATAAGGGCAATGCCAAGAGTAGATAGTGAAGGTGTCA
TGTGTGGAGCCAATTTCAAGGT
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