CN182483

Overview
NameCN182483
Unique NameCN182483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182483 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.519e-45
Identity = 87/179 (48.60%), Postives = 123/179 (68.72%), Query Frame = -3
Query:  222 VPDYNSGKWEVQYFHDHATLLSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 758
            VPD  SGK E+QY H++A + ++I L  SP ++ +   G  ++A G +  +DT +GNFTK  AG+S +  D  AS+ L DKGDT+ ASY H +  +  +A   E+T  FS+NENT T+G  + +D LT VKA++N++GK  AL+QHE  PKSL TIS EVDT+A+EK+ + GLA+ALKP
Sbjct:   98 VPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276          
BLAST of CN182483 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 6.003e-45
Identity = 89/179 (49.72%), Postives = 120/179 (67.04%), Query Frame = -3
Query:  222 VPDYNSGKWEVQYFHDHATLLSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 758
            VPD  SGK EVQY HD+A + +++ L  +P ++ +  +GT  IA G +  +DT +G+FTK  AG+S T  D  AS+ L +KGD + ASY H +  L  +A   E+   FSTNEN  TVG  + +D LT VKA++NN GK  ALLQHE  PKSL T+S EVDTK+++K  +FGLA+ALKP
Sbjct:   98 VPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276          
BLAST of CN182483 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.337e-44
Identity = 89/179 (49.72%), Postives = 127/179 (70.95%), Query Frame = -3
Query:  222 VPDYNSGKWEVQYFHDHATLLSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 758
            VPD  SGK+E+QY HD+A + ++I L  SP +++++  GT ++A GA+   DT +GN TKY AG+S +  D  AS+ L +KGD++ ASY +H+ N   +A   E+T  FS+NEN+ T G  + +D LTVVKA+ NN GK  ALLQHE  PKS+ TIS+EVDTKA++K+ + G+A+ALKP
Sbjct:   97 VPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASY-YHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274          
BLAST of CN182483 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.891e-44
Identity = 90/180 (50.00%), Postives = 126/180 (70.00%), Query Frame = -3
Query:  222 VPDYNSGKWEVQYFHDHATLLSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVG-EITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 758
            VPD  SGK E+QY HD+A + ++I L  +P ++++   GT ++A GA+   DT + NF KY A +S T  D  AS+ L +KGD++ ASY H ++  K   AVG E+T  FS+NEN+ T G  + +D LT+VKA++NN GK  AL+QHE +PKSL TIS+EVDTKA+EK+ + G+AIALKP
Sbjct:   98 VPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVE--KSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275          
BLAST of CN182483 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 5.082e-44
Identity = 86/179 (48.04%), Postives = 124/179 (69.27%), Query Frame = -3
Query:  222 VPDYNSGKWEVQYFHDHATLLSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 758
            VP+  SGK E+QY H++A + S++ L  +P ++ ++ IGT ++AFGA+  +DT  G  TK  A ++  K D   S+ L +KGD + ASY H ++ L  +A   +I+ RFST ENTFT+G  +A+D LT VK ++ N GK  AL+QHE  PKSL+TISSEVDTKA+EK+ + GL++ALKP
Sbjct:   98 VPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276          
BLAST of CN182483 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 3.642e-42
Identity = 83/179 (46.37%), Postives = 124/179 (69.27%), Query Frame = -3
Query:  222 VPDYNSGKWEVQYFHDHATLLSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 758
            VPD NSGK E+QY H++A + +++ L Q+P ++ +  IG+  +A G +  +DT SGNFTK  AG+S TK D  AS+ + DKGD + ASY H ++ L  +A   E++ + S+ ++T TVG  +++D LT VKA++N+ G   AL+QHE  PKS  TIS EVDTK+++K+ + GLA+ALKP
Sbjct:   98 VPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276          
BLAST of CN182483 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.998e-40
Identity = 82/180 (45.56%), Postives = 119/180 (66.11%), Query Frame = -3
Query:  222 VPDYNSGKWEVQYFHDHATLLSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVG-EITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 758
            +PD+ SGK EVQYFHD+A + +++    +P ++ +  +GT  ++ G +  Y+T SGNF  + AG + TK D  AS+IL DKG+ + ASY      +  S  VG EI+  F+T EN  TVG  +A+D LT VKA++NN G   AL+QHE  PKS  T+S EVD+KA++K+ + G+A+ALKP
Sbjct:   98 LPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASY---YQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274          
BLAST of CN182483 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.107e-38
Identity = 73/178 (41.01%), Postives = 116/178 (65.17%), Query Frame = -3
Query:  225 VPDYNSGKWEVQYFHDHATLLSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALK 758
            VPD  SGK E QY H++A + +++ LN +P ++++   G+ +++ G +  +DT + +FTKY A +S+T PD  AS+ L + GDT+ ASY H + N   +A   E++   S NE+T   G  +++D  T +K + NN+G   AL+QHE  PKS +TIS +VDTKA+EK+ + GL++ LK
Sbjct:   99 VPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276          
The following BLAST results are available for this feature:
BLAST of CN182483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC2_SOLTU3.519e-4548.60Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU6.003e-4549.72Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC1_ORYSJ1.337e-4449.72Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT3.891e-4450.00Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_PEA5.082e-4448.04Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ARATH3.642e-4246.37Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC2_ARATH1.998e-4045.56Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC_MAIZE7.107e-3841.01Outer plastidial membrane protein porin OS=Zea may... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002I14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182483 ID=CN182483; Name=CN182483; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTTTAATTTCCAGAAAAATGTTCAAAATAGAGAAATA
GATGACCATGGTATCACCTAAGCATCAAAACAATTAATCCACAGTTACCA
AGAACCTAGAAACAAATTTATCTTGGAACTCCTTATTGACGACACTTCTC
AAGTATCACCATTAAATTGGAAAACCTCTAAAATTCCAACAATGCATCAT
TTGCCTGGAAGAGGATCATCAGGGCTTGAGGGCAATGGCCAAACCAAACC
TAGGAGTTTTCTCCAACGCCTTAGTGTCAACCTCACTAGAAATCGTAAGC
AATGATTTTGGAATAACCTCATGCTGCAGCAGCGCACCAAGCTTTCCATG
GTTGTTGAGCTTTGCCTTCACTACTGTGAGGTGATCAACAGCATATGATC
CTCCAACTGTAAAAGTATTCTCATTTGTTGAAAACCTTCTGGTGATCTCT
CCCACAGCAGCACTCTTCTTCAAGTTGTCCAGATGATGTACGTATGATGC
TCTAATTGTGTCTCCCTTGTCACCCAGAATTATTGAAGCACATGAATCTG
GTTTGGTCACACTAATGCCGGCTGTGTACTTTGTAAAATTACCAGATGTG
GTATCATACCCAGCCTCAGCACCAAAAGCAATGCTCGGGGTACCAATGGT
GGCTGTAACATCAATGCAAGGGGATTGATTCAAAGCAATGGCTGAAAGTA
AGGTGGCATGATCATGGAAGTACTGAACCTCCCACTTGCCAGAGTTATAA
TCAGGCACTT
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