CN189070

Overview
NameCN189070
Unique NameCN189070
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189070 vs. ExPASy Swiss-Prot
Match: PAP_CITUN (Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.059e-48
Identity = 96/114 (84.21%), Postives = 101/114 (88.60%), Query Frame = -1
Query:  266 FEVRSPQRVQIKFEEGILGTPQVTDSLVIPENVEFLGQKIDFSPFKGILFSVQDTGSFVAKAIFSQPPLKFFIFNSNGQSWVLTPYLDEDFWISRADAGRVFVFIKEGSPLLMP 607
            FEVRSP+RVQIKFEEG++GTPQVTDSLV+PENVEFLGQKID SPFKGIL SVQDT S VAK I SQPPLKF I NSN QSW+LT YLDED  ISRADAG VFVFIKEGSPLLMP
Sbjct:  210 FEVRSPKRVQIKFEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 323          
BLAST of CN189070 vs. ExPASy Swiss-Prot
Match: LIPC_SOLTU (Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 9.872e-44
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = -1
Query:  266 FEVRSPQRVQIKFEEGILGTPQVTDSLVIPENVEFLGQKIDFSPFKGILFSVQDTGSFVAKAIFSQPPLKFFIFNSNGQSWVLTPYLDEDFWISRADAGRVFVFIKEGSPLLMP 607
            FEVRSP+RVQIKFEEGI+GTPQ+TDS+V+PENVEFLGQKID SPFKG++ SVQDT S VAK+I SQPP+KF I N+N QSW+LT YLD++  ISR DAG VFV IKEGSPLL P
Sbjct:  213 FEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDLSPFKGLITSVQDTASSVAKSISSQPPIKFPITNNNAQSWLLTTYLDDELRISRGDAGSVFVLIKEGSPLLKP 326          
BLAST of CN189070 vs. ExPASy Swiss-Prot
Match: LIPC_SOLDE (Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.426e-42
Identity = 84/114 (73.68%), Postives = 97/114 (85.09%), Query Frame = -1
Query:  266 FEVRSPQRVQIKFEEGILGTPQVTDSLVIPENVEFLGQKIDFSPFKGILFSVQDTGSFVAKAIFSQPPLKFFIFNSNGQSWVLTPYLDEDFWISRADAGRVFVFIKEGSPLLMP 607
            FEVRSP+RVQIKFEEGI+GTPQ+TDS+V+PENVEFLGQKID SPFKG++ SVQDT S V K+I SQPP+KF I N+N QSW+LT YLD++  I R DAG VFV IKEGSPLL P
Sbjct:  213 FEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDVSPFKGLITSVQDTASSVVKSISSQPPIKFPITNNNAQSWLLTTYLDDELRIPRGDAGSVFVLIKEGSPLLKP 326          
BLAST of CN189070 vs. ExPASy Swiss-Prot
Match: PAP2_BRACM (Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.631e-38
Identity = 77/114 (67.54%), Postives = 92/114 (80.70%), Query Frame = -1
Query:  266 FEVRSPQRVQIKFEEGILGTPQVTDSLVIPENVEFLGQKIDFSPFKGILFSVQDTGSFVAKAIFSQPPLKFFIFNSNGQSWVLTPYLDEDFWISRADAGRVFVFIKEGSPLLMP 607
            FE+RSP+RVQIKFEEG++GTPQ+TDS+ IPE VEFLGQKID +P +G+L SVQDT + VA+ I SQPPLKF +   + QSW+LT YLD+D  ISR D G VFV IKEGSPLL P
Sbjct:  206 FEIRSPKRVQIKFEEGVIGTPQLTDSIEIPEYVEFLGQKIDLTPIRGLLTSVQDTATSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSPLLNP 319          
BLAST of CN189070 vs. ExPASy Swiss-Prot
Match: CHRC_CUCSA (Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.631e-38
Identity = 77/112 (68.75%), Postives = 91/112 (81.25%), Query Frame = -1
Query:  272 FEVRSPQRVQIKFEEGILGTPQVTDSLVIPENVEFLGQKIDFSPFKGILFSVQDTGSFVAKAIFSQPPLKFFIFNSNGQSWVLTPYLDEDFWISRADAGRVFVFIKEGSPLL 607
            FEVRSP RV IKFEEG++GTPQ+TDS+VIP+NV+FLGQKIDF+PF GI+ S+QDT S VAK I SQPP+KF I N+  +SW+LT YLDED  ISR D G VFV +KEGS  L
Sbjct:  209 FEVRSPLRVHIKFEEGVIGTPQLTDSIVIPDNVDFLGQKIDFTPFNGIISSLQDTASNVAKTISSQPPIKFSISNTRVESWLLTTYLDEDLRISRGDGGSVFVLLKEGSSFL 320          
BLAST of CN189070 vs. ExPASy Swiss-Prot
Match: PAP2_ARATH (Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.746e-38
Identity = 77/114 (67.54%), Postives = 91/114 (79.82%), Query Frame = -1
Query:  266 FEVRSPQRVQIKFEEGILGTPQVTDSLVIPENVEFLGQKIDFSPFKGILFSVQDTGSFVAKAIFSQPPLKFFIFNSNGQSWVLTPYLDEDFWISRADAGRVFVFIKEGSPLLMP 607
            FE+RSP+RVQIKFE+G++GTPQ+TDS+ IPE VE LGQKID +P +G+L SVQDT S VA+ I SQPPLKF +   N QSW+LT YLD+D  ISR D G VFV IKEGSPLL P
Sbjct:  197 FEIRSPKRVQIKFEQGVIGTPQLTDSIEIPEYVEVLGQKIDLNPIRGLLTSVQDTASSVARTISSQPPLKFSLPADNAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSPLLNP 310          
BLAST of CN189070 vs. ExPASy Swiss-Prot
Match: PAP1_ARATH (Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.076e-37
Identity = 75/114 (65.79%), Postives = 92/114 (80.70%), Query Frame = -1
Query:  266 FEVRSPQRVQIKFEEGILGTPQVTDSLVIPENVEFLGQKIDFSPFKGILFSVQDTGSFVAKAIFSQPPLKFFIFNSNGQSWVLTPYLDEDFWISRADAGRVFVFIKEGSPLLMP 607
            FE+RSP+RVQIKFE+G++GTPQ+TDS+ IPE+VE LGQKID +P KG+L SVQDT S VA+ I +QPPLKF + + N QSW+LT YLD+D  ISR D G V+V IKEGS LL P
Sbjct:  205 FEIRSPKRVQIKFEQGVIGTPQLTDSIEIPESVEVLGQKIDLNPIKGLLTSVQDTASSVARTISNQPPLKFSLPSDNTQSWLLTTYLDKDLRISRGDGGSVYVLIKEGSSLLNP 318          
BLAST of CN189070 vs. ExPASy Swiss-Prot
Match: PAP1_BRACM (Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.169e-36
Identity = 75/114 (65.79%), Postives = 90/114 (78.95%), Query Frame = -1
Query:  266 FEVRSPQRVQIKFEEGILGTPQVTDSLVIPENVEFLGQKIDFSPFKGILFSVQDTGSFVAKAIFSQPPLKFFIFNSNGQSWVLTPYLDEDFWISRADAGRVFVFIKEGSPLLMP 607
            FEVRSP+RVQ+KFE+G++GTPQ+TDS+ IPE VE LGQKID +P KG+L SVQDT S VA+ I SQPPLKF +   + QSW+LT YLD+D  ISR D G VFV I+EGS LL P
Sbjct:  214 FEVRSPKRVQVKFEQGVIGTPQLTDSIEIPEFVEVLGQKIDLNPIKGLLTSVQDTASSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKDLRISRGDGGSVFVLIREGSSLLNP 327          
BLAST of CN189070 vs. ExPASy Swiss-Prot
Match: PAP2_ORYSJ (Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.132e-31
Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = -1
Query:  272 FEVRSPQRVQIKFEEGILGTPQVTDSLVIPENVEFLGQKIDFSPFKGILFSVQDTGSFVAKAIFSQPPLKFFIFNSNGQSWVLTPYLDEDFWISRADAGRVFVFIKEGSPLL 607
            FEVRSP+RVQIKF+EGI+GTPQ+TDS+V+PE  E  GQ ID +P KGI  S+++  S VA+ I  QPPLK  I   N +SW+LT YLD++  ISR D   +FV  KEGS LL
Sbjct:  207 FEVRSPKRVQIKFDEGIIGTPQLTDSIVLPEKFELFGQNIDLTPLKGIFSSIENAASSVARTISGQPPLKIPIRTDNAESWLLTTYLDDELRISRGDGSSIFVLFKEGSTLL 318          
BLAST of CN189070 vs. ExPASy Swiss-Prot
Match: PAP3_BRACM (Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris GN=PAP3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.174e-20
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  272 FEVRSPQRVQIKFEEGILGTPQVTDSLVIPENVEFLGQKIDFSPFKGILFSVQDTGSFVAKAIFSQPPLKFFIFNSNGQSWVLTPYLDEDFWISRADAGRVFVFIKEGSPLL 607
            FEVR+P R+++ F+EG L  P++  S+ +PE+V   GQ+I+ S  K  L  +QD  + +++AI  QPPLK     + G SW+LT YLD+D  ISR D G +FV  +EGS LL
Sbjct:  248 FEVRTPSRIEVSFKEGTLKPPEIKSSVDLPESVGVFGQEINLSFLKQSLNPLQDVAANISRAISGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDGG-LFVLAREGSSLL 358          
The following BLAST results are available for this feature:
BLAST of CN189070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP_CITUN5.059e-4884.21Plastid-lipid-associated protein, chloroplastic OS... [more]
LIPC_SOLTU9.872e-4475.44Light-induced protein, chloroplastic OS=Solanum tu... [more]
LIPC_SOLDE1.426e-4273.68Light-induced protein, chloroplastic OS=Solanum de... [more]
PAP2_BRACM1.631e-3867.54Plastid lipid-associated protein 2, chloroplastic ... [more]
CHRC_CUCSA1.631e-3868.75Chromoplast-specific carotenoid-associated protein... [more]
PAP2_ARATH4.746e-3867.54Probable plastid-lipid-associated protein 2, chlor... [more]
PAP1_ARATH3.076e-3765.79Probable plastid-lipid-associated protein 1, chlor... [more]
PAP1_BRACM1.169e-3665.79Plastid lipid-associated protein 1, chloroplastic ... [more]
PAP2_ORYSJ1.132e-3158.04Probable plastid-lipid-associated protein 2, chlor... [more]
PAP3_BRACM1.174e-2045.54Plastid lipid-associated protein 3, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001E09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189070 ID=CN189070; Name=CN189070; organism=Citrus sinensis; type=EST; length=607bp
TTTTTTTTTTTTTTTTTGAATTTCAAATAATTATATTTAATTGAACACAC
AAATTCAACAACTAAAACAAATTAGGGGGCCCAAAAAATTGTTTAGTATT
TACCCCCTTCCTACTTTGAAATCTACGGCACGGGTATCTAGCTGCAAATC
TAGTAACACCGAGGGTATCATTCCATTACTTGAAAATACTTAAAAAGCAC
CAACACGTTCAAGTCTTTATTCAATATTACCATACCGAAGGAGTGAACAT
TTGGGTGGGCGTTCATGGCATCAAAAGGGGGCTTCCTTCCTTGATGAAAA
CAAAAACCCTGCCAGCATCTGCCCTTGAAATCCAAAAATCTTCATCAAGG
TATGGGGTTAGCACCCATGATTGACCATTGCTGTTAAAAATAAAAAACTT
CAAAGGGGGTTGGCTAAAAATGGCCTTTGCAACAAATGAACCTGTGTCTT
GGACTGAAAAAAGTATGCCTTTGAAGGGGGAAAAATCAATCTTTTGTCCC
AAAAATTCAACATTTTCCGGTATCACTAGGGAATCAGTTACCTGAGGCGT
CCCAAGGATACCTTCCTCAAACTTGATCTGCACACGCTGGGGGCTCCGCA
CTTCAAA
back to top