CN182476

Overview
NameCN182476
Unique NameCN182476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1017 contig Csv1_Contig1017:88..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN182476 vs. ExPASy Swiss-Prot
Match: NUDT9_ARATH (Nudix hydrolase 9 OS=Arabidopsis thaliana GN=NUDT9 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.132e-41
Identity = 82/135 (60.74%), Postives = 103/135 (76.30%), Query Frame = -2 
Query:  183 GHPEPQDAGITSHPCGST--DSEFINHKVSQEMFDSITREVVEEIGVPSESLCNPLFIGISRRRLNVRPAAFFFIKCSLQSNEIQQLYSTAQDGYESTQLFAVSMIELENMASKMPGCHQGGFALYKLMVEAMNN 581
            GHPEP   GI  H   +     E +N KV+QEMFDSI  EVVEE G+P+ SL +PLFIGISRR LNVRPA FF++KCS  S++IQ+LYS+A+DG+ESTQL  VS+ EL+ M S+MPGCH GGFALY+LM++ + N
Sbjct:  168 GHPEPTAVGIDYHQLENNVQTGEVLNKKVTQEMFDSIICEVVEETGIPASSLSSPLFIGISRRELNVRPAMFFYLKCSHHSDDIQRLYSSAEDGFESTQLHTVSLDELKMMTSRMPGCHHGGFALYELMLQRLKN 302
The following BLAST results are available for this feature:
BLAST of CN182476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NUDT9_ARATH4.132e-4160.74Nudix hydrolase 9 OS=Arabidopsis thaliana GN=NUDT9... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002I10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182476 ID=CN182476; Name=CN182476; organism=Citrus sinensis; type=EST; length=582bp
GAGGGAGAAATCAATGCAATTGCATAATCATGCCTTTATCATGTGTTGAT
TAACTATACTTTTTAGAGAAAGAATCTAGTACGTCTCCTTTAATTCTGCT
GTTTATCAACTATAATGTAAAATATTAGTGGAGGAAAAGCAAAGCCGCAG
ACTGCCATGGACTCTCATGAATTTTATGGTATATTATTCATAGCTTCTAC
CATCAGCTTATAAAGAGCAAATCCACCTTGATGGCAGCCAGGCATTTTAG
ACGCCATGTTCTCCAACTCAATCATTGAAACTGCAAAAAGTTGGGTTGAT
TCATAGCCATCTTGTGCGGTAGAATACAACTGTTGAATTTCGTTTGACTG
AAGACTGCATTTTATGAAGAAAAAAGCAGCTGGTCTAACATTCAAACGCC
TGCGGGATATACCAATGAAAAGTGGGTTGCAAAGAGATTCTGAAGGTACT
CCAATTTCTTCAACCACTTCGCGAGTAATGCTGTCAAACATTTCTTGAGA
AACCTTGTGGTTTATAAACTCAGAGTCTGTTGACCCACACGGATGAGATG
TAATTCCAGCATCTTGGGGCTCTGGATGGCCT
back to top